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Nemo
2.4.0b
Simulate forward-in-time genetic evolution in a spatially explicit, individual-based stochastic simulator
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This is the complete list of members for LCE_Breed, including all inherited members.
| _alpha_male | LCE_Breed_base | private |
| _do_inherit | LCE_Breed_base | private |
| _event_name | LifeCycleEvent | protected |
| _LCELinkedTraitIndex | LifeCycleEvent | protected |
| _LCELinkedTraitType | LifeCycleEvent | protected |
| _mating_males | LCE_Breed_base | private |
| _mating_proportion | LCE_Breed_base | private |
| _mating_system | LCE_Breed_base | private |
| _mean_fecundity | LCE_Breed_base | protected |
| _paramSet | SimComponent | protected |
| _popPtr | LifeCycleEvent | protected |
| _sd_fecundity | LCE_Breed_base | private |
| add_parameter(Param *param) | SimComponent | inlinevirtual |
| add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd) | SimComponent | inlinevirtual |
| add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater) | SimComponent | inlinevirtual |
| addAgeClass() | LCE_Breed | virtual |
| attach_trait(string trait) | LifeCycleEvent | inlinevirtual |
| breed(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | |
| breed_cloning(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | |
| checkCloning(Patch *thePatch) | LCE_Breed_base | inline |
| checkMatingCondition(Patch *thePatch) | LCE_Breed_base | inline |
| CheckMatingConditionFuncPtr | LCE_Breed_base | protected |
| checkNoSelfing(Patch *thePatch) | LCE_Breed_base | inline |
| checkPolygyny(Patch *thePatch) | LCE_Breed_base | inline |
| checkSelfing(Patch *thePatch) | LCE_Breed_base | inline |
| clone() | LCE_Breed | inlinevirtual |
| do_breed(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | inline |
| DoBreedFuncPtr | LCE_Breed_base | protected |
| doInheritance() | LCE_Breed_base | inline |
| execute() | LCE_Breed | virtual |
| FecundityFuncPtr | LCE_Breed_base | protected |
| fullMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| fullPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| fullPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| fullSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| get_event_name() | LifeCycleEvent | inlinevirtual |
| get_name() | SimComponent | inlinevirtual |
| get_parameter(std::string name) | SimComponent | inlinevirtual |
| get_parameter_value(std::string name) | SimComponent | inlinevirtual |
| get_paramset() | SimComponent | inlinevirtual |
| get_pop_ptr() | LifeCycleEvent | inlinevirtual |
| get_rank() | LifeCycleEvent | inlinevirtual |
| getFatherPtr(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inlinevirtual |
| getFecundity(unsigned int patch) | LCE_Breed_base | inline |
| getFecundity(double mean) | LCE_Breed_base | inline |
| getFixedFecundity(double mean) | LCE_Breed_base | inline |
| getGaussianFecundity(double mean) | LCE_Breed_base | inline |
| getLogNormalFecundity(double mean) | LCE_Breed_base | inline |
| getMatingProportion() | LCE_Breed_base | inline |
| getMatingSystem() | LCE_Breed_base | inline |
| getMeanFecundity(unsigned int patch) | LCE_Breed_base | inline |
| getOffsprgSex() | LCE_Breed_base | inline |
| GetOffsprgSex | LCE_Breed_base | protected |
| getOffsprgSexCloning() | LCE_Breed_base | inline |
| getOffsprgSexFixed() | LCE_Breed_base | |
| getOffsprgSexRandom() | LCE_Breed_base | inline |
| getOffsprgSexSelfing() | LCE_Breed_base | inline |
| getPoissonFecundity(double mean) | LCE_Breed_base | inline |
| has_parameter(std::string name) | SimComponent | inlinevirtual |
| init(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
| isWrightFisher() | LCE_Breed_base | inline |
| LCE_Breed() | LCE_Breed | inline |
| LCE_Breed_base() | LCE_Breed_base | |
| LifeCycleEvent(const char *name, const char *trait_link) | LifeCycleEvent | inline |
| loadFileServices(FileServices *loader) | LCE_Breed | inlinevirtual |
| loadStatServices(StatServices *loader) | LCE_Breed | inlinevirtual |
| loadUpdaters(UpdaterServices *loader) | SimComponent | inlinevirtual |
| makeOffspring(Individual *ind) | LCE_Breed_base | |
| MatingFuncPtr | LCE_Breed_base | protected |
| NonWrightFisherPopulation() | LCE_Breed_base | |
| partialMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| partialPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| partialPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| partialSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| PopModelFuncPtr | LCE_Breed_base | protected |
| random_hermaphrodite(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| RandomMating(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| removeAgeClass() | LCE_Breed | inlinevirtual |
| requiredAgeClass() | LCE_Breed | inlinevirtual |
| resetParameterFromSource(std::string param, SimComponent *cmpt) | LCE_Breed | inlinevirtual |
| set_event_name(std::string &name) | LifeCycleEvent | inlinevirtual |
| set_event_name(const char *name) | LifeCycleEvent | inlinevirtual |
| set_paramset(std::string name, bool required, SimComponent *owner) | LifeCycleEvent | inlinevirtual |
| SimComponent::set_paramset(ParamSet *paramset) | SimComponent | inlinevirtual |
| set_paramsetFromCopy(const ParamSet &PSet) | SimComponent | inlinevirtual |
| set_pop_ptr(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
| setFecundity() | LCE_Breed_base | |
| setMatingSystem() | LCE_Breed_base | |
| setParameters() | LCE_Breed | virtual |
| setSexRatio() | LCE_Breed_base | |
| SimComponent() | SimComponent | inline |
| WrightFisherPopulation() | LCE_Breed_base | |
| ~LCE_Breed() | LCE_Breed | inlinevirtual |
| ~LCE_Breed_base() | LCE_Breed_base | inlinevirtual |
| ~LifeCycleEvent() | LifeCycleEvent | inlinevirtual |
| ~SimComponent() | SimComponent | inlinevirtual |
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