| _alpha_male | LCE_Breed_base | private |
| _base_fitness | LCE_Selection_base | protected |
| _breed_selection | LCE_Breed_Selection | private |
| _diffs | LCE_Selection_base | private |
| _do_change_local_opt | LCE_Selection_base | private |
| _do_inherit | LCE_Breed_base | private |
| _eVariance | LCE_Selection_base | protected |
| _event_name | LifeCycleEvent | protected |
| _fitness | LCE_Selection_base | protected |
| _FitnessFixModel | LCE_Selection_base | private |
| _Fpedigree | LCE_Selection_base | private |
| _getFitness | LCE_Selection_base | protected |
| _getRawFitness | LCE_Selection_base | protected |
| _gsl_selection_matrix | LCE_Selection_base | private |
| _ind_cntr | LCE_Selection_base | protected |
| _is_absolute | LCE_Selection_base | protected |
| _is_local | LCE_Selection_base | protected |
| _LCELinkedTraitIndex | LifeCycleEvent | protected |
| _LCELinkedTraitType | LifeCycleEvent | protected |
| _letheq | LCE_Selection_base | private |
| _linear_selection_offset | LCE_Selection_base | private |
| _linear_selection_strength | LCE_Selection_base | private |
| _local_optima | LCE_Selection_base | private |
| _mating_males | LCE_Breed_base | private |
| _mating_proportion | LCE_Breed_base | private |
| _mating_system | LCE_Breed_base | private |
| _max_fitness | LCE_Selection_base | protected |
| _mean_fecundity | LCE_Breed_base | protected |
| _mean_fitness | LCE_Selection_base | protected |
| _mean_trait_value | LCE_Selection_base | private |
| _nb_trait | LCE_Breed_Selection | private |
| _nonSelectedTraitIndices | LCE_Breed_Selection | private |
| _paramSet | SimComponent | protected |
| _popPtr | LifeCycleEvent | protected |
| _rate_of_change_is_std | LCE_Selection_base | private |
| _rate_of_change_local_optima | LCE_Selection_base | private |
| _res1 | LCE_Selection_base | private |
| _scaling_factor | LCE_Selection_base | protected |
| _sd_fecundity | LCE_Breed_base | private |
| _selection_matrix | LCE_Selection_base | private |
| _selection_variance | LCE_Selection_base | protected |
| _SelectionModels | LCE_Selection_base | protected |
| _selectTraitDimension | LCE_Selection_base | protected |
| _set_std_rate_at_generation | LCE_Selection_base | private |
| _setNewLocalOptima | LCE_Selection_base | protected |
| _setScalingFactor | LCE_Selection_base | protected |
| _stater | LCE_Selection_base | protected |
| _std_rate_reference_patch | LCE_Selection_base | private |
| _survival | LCE_Selection_base | protected |
| _TraitIndices | LCE_Selection_base | protected |
| _Traits | LCE_Selection_base | protected |
| _writer | LCE_Selection_base | protected |
| add_parameter(Param *param) | SimComponent | inlinevirtual |
| add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd) | SimComponent | inlinevirtual |
| add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater) | SimComponent | inlinevirtual |
| addAgeClass() | LCE_Breed_Selection | inlinevirtual |
| addPhenotypicSD(unsigned int deme, double *stDev) | LCE_Selection_base | |
| attach_trait(string trait) | LifeCycleEvent | inlinevirtual |
| breed(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | |
| breed_cloning(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | |
| changeLocalOptima() | LCE_Selection_base | |
| checkChangeLocalOptima() | LCE_Selection_base | |
| checkCloning(Patch *thePatch) | LCE_Breed_base | inline |
| checkMatingCondition(Patch *thePatch) | LCE_Breed_base | inline |
| CheckMatingConditionFuncPtr | LCE_Breed_base | protected |
| checkNoSelfing(Patch *thePatch) | LCE_Breed_base | inline |
| checkPolygyny(Patch *thePatch) | LCE_Breed_base | inline |
| checkSelfing(Patch *thePatch) | LCE_Breed_base | inline |
| clone() | LCE_Breed_Selection | inlinevirtual |
| do_breed(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | inline |
| do_breed_selection_FecFitness(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
| do_breed_selection_OffSurvival(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
| do_breed_selection_WrightFisher_1sex(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
| do_breed_selection_WrightFisher_2sex(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
| DoBreedFuncPtr | LCE_Breed_base | protected |
| doInheritance() | LCE_Breed_base | inline |
| doViabilitySelection(sex_t SEX, age_idx AGE, Patch *patch, unsigned int p) | LCE_Selection_base | |
| execute() | LCE_Breed_Selection | virtual |
| FecundityFuncPtr | LCE_Breed_base | protected |
| fullMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| fullPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| fullPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| fullSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| get_event_name() | LifeCycleEvent | inlinevirtual |
| get_name() | SimComponent | inlinevirtual |
| get_parameter(std::string name) | SimComponent | inlinevirtual |
| get_parameter_value(std::string name) | SimComponent | inlinevirtual |
| get_paramset() | SimComponent | inlinevirtual |
| get_pop_ptr() | LifeCycleEvent | inlinevirtual |
| get_rank() | LifeCycleEvent | inlinevirtual |
| getFatherPtr(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inlinevirtual |
| getFecundity(unsigned int patch) | LCE_Breed_base | inline |
| getFecundity(double mean) | LCE_Breed_base | inline |
| getFitness(Individual *ind, unsigned int patch) | LCE_Selection_base | inline |
| getFitnessAbsolute(Individual *ind, unsigned int patch) | LCE_Selection_base | |
| getFitnessDirect(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | inline |
| getFitnessFixedEffect(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | inline |
| getFitnessMultivariateGaussian(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFitnessMultivariateGaussian_VE(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFitnessRelative(Individual *ind, unsigned int patch) | LCE_Selection_base | inline |
| getFitnessUnivariateGaussian(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFitnessUnivariateGaussian_VE(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFitnessUnivariateLinear(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFitnessUnivariateQuadratic(Individual *ind, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFixedFecundity(double mean) | LCE_Breed_base | inline |
| getGaussianFecundity(double mean) | LCE_Breed_base | inline |
| getLocalOptima() const | LCE_Selection_base | inline |
| getLogNormalFecundity(double mean) | LCE_Breed_base | inline |
| getMatingProportion() | LCE_Breed_base | inline |
| getMatingSystem() | LCE_Breed_base | inline |
| getMaxFitness(age_idx age) | LCE_Selection_base | |
| getMaxPatchFitness(age_idx age, unsigned int p) | LCE_Selection_base | |
| getMeanFecundity(unsigned int patch) | LCE_Breed_base | inline |
| getMeanFitness(age_idx age) | LCE_Selection_base | |
| getMeanPatchFitness(age_idx age, unsigned int p) | LCE_Selection_base | |
| getOffsprgSex() | LCE_Breed_base | inline |
| GetOffsprgSex | LCE_Breed_base | protected |
| getOffsprgSexCloning() | LCE_Breed_base | inline |
| getOffsprgSexFixed() | LCE_Breed_base | |
| getOffsprgSexRandom() | LCE_Breed_base | inline |
| getOffsprgSexSelfing() | LCE_Breed_base | inline |
| getPoissonFecundity(double mean) | LCE_Breed_base | inline |
| has_parameter(std::string name) | SimComponent | inlinevirtual |
| init(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
| isWrightFisher() | LCE_Breed_base | inline |
| LCE_Breed_base() | LCE_Breed_base | |
| LCE_Breed_Selection() | LCE_Breed_Selection | |
| LCE_Selection_base() | LCE_Selection_base | |
| LifeCycleEvent(const char *name, const char *trait_link) | LifeCycleEvent | inline |
| loadFileServices(FileServices *loader) | LCE_Breed_Selection | inlinevirtual |
| loadStatServices(StatServices *loader) | LCE_Breed_Selection | virtual |
| loadUpdaters(UpdaterServices *loader) | SimComponent | inlinevirtual |
| makeOffspring(Individual *ind) | LCE_Breed_base | |
| makeOffspringWithSelection(Individual *ind, unsigned int natalpatch) | LCE_Breed_Selection | |
| MatingFuncPtr | LCE_Breed_base | protected |
| NonWrightFisherPopulation() | LCE_Breed_base | |
| partialMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| partialPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| partialPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| partialSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| PopModelFuncPtr | LCE_Breed_base | protected |
| random_hermaphrodite(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| RandomMating(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| removeAgeClass() | LCE_Breed_Selection | inlinevirtual |
| requiredAgeClass() | LCE_Breed_Selection | inlinevirtual |
| resetCounters() | LCE_Selection_base | |
| resetParameterFromSource(std::string param, SimComponent *cmpt) | LCE_Breed_Selection | inlinevirtual |
| set_event_name(std::string &name) | LifeCycleEvent | inlinevirtual |
| set_event_name(const char *name) | LifeCycleEvent | inlinevirtual |
| set_fit_model() | LCE_Selection_base | |
| set_local_optima() | LCE_Selection_base | |
| set_param_rate_of_change() | LCE_Selection_base | |
| set_paramset(std::string name, bool required, SimComponent *owner) | LifeCycleEvent | inlinevirtual |
| SimComponent::set_paramset(ParamSet *paramset) | SimComponent | inlinevirtual |
| set_paramsetFromCopy(const ParamSet &PSet) | SimComponent | inlinevirtual |
| set_pop_ptr(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
| set_sel_model() | LCE_Selection_base | |
| set_std_rate_of_change() | LCE_Selection_base | |
| setFecundity() | LCE_Breed_base | |
| setLocalOptima() | LCE_Selection_base | |
| setMatingSystem() | LCE_Breed_base | |
| setMeanFitness(age_idx age) | LCE_Selection_base | inline |
| setMeans(unsigned int tot_ind) | LCE_Selection_base | |
| setNonSelectedTraitTable() | LCE_Breed_Selection | |
| setParameters() | LCE_Breed_Selection | virtual |
| setReproScaledFitness_gsl(sex_t SEX, unsigned int numReproInd, Patch *patch) | LCE_Breed_Selection | |
| setReproScaledFitness_sum(sex_t SEX, valarray< double > &survival, unsigned int numReproFem, Patch *patch) | LCE_Breed_Selection | |
| setScalingFactorAbsolute(age_idx age, unsigned int p) | LCE_Selection_base | inline |
| setScalingFactorForLinearSelection(age_idx age, unsigned int p) | LCE_Selection_base | |
| setScalingFactorGlobal(age_idx age, unsigned int p) | LCE_Selection_base | |
| setScalingFactorLocal(age_idx age, unsigned int p) | LCE_Selection_base | |
| setScalingFactorMaxGlobal(age_idx age, unsigned int p) | LCE_Selection_base | |
| setScalingFactorMaxLocal(age_idx age, unsigned int p) | LCE_Selection_base | |
| setSelectionMatrix() | LCE_Selection_base | |
| setSexRatio() | LCE_Breed_base | |
| SimComponent() | SimComponent | inline |
| updateFitnessCounters(double fitness, unsigned int ped_class, bool survived) | LCE_Selection_base | |
| WrightFisherPopulation() | LCE_Breed_base | |
| ~LCE_Breed_base() | LCE_Breed_base | inlinevirtual |
| ~LCE_Breed_Selection() | LCE_Breed_Selection | inlinevirtual |
| ~LCE_Selection_base() | LCE_Selection_base | virtual |
| ~LifeCycleEvent() | LifeCycleEvent | inlinevirtual |
| ~SimComponent() | SimComponent | inlinevirtual |
