| _alpha_male | LCE_Breed_base | private |
| _base_fitness | LCE_Selection_base | protected |
| _breed_disperse | LCE_Breed_Disperse | private |
| _breed_selection | LCE_Breed_Selection | private |
| _breed_selection_disperse | LCE_Breed_Selection_Disperse | private |
| _diffs | LCE_Selection_base | private |
| _disp_model | LCE_Disperse_base | private |
| _disp_propagule_prob | LCE_Disperse_base | private |
| _dispersing_sex | LCE_Breed_Disperse | protected |
| _DispMatrix | LCE_Disperse_base | private |
| _do_change_local_opt | LCE_Selection_base | private |
| _do_inherit | LCE_Breed_base | private |
| _eVariance | LCE_Selection_base | protected |
| _event_name | LifeCycleEvent | protected |
| _fem_rate | LCE_Disperse_base | private |
| _fitness | LCE_Selection_base | protected |
| _FitnessFixModel | LCE_Selection_base | private |
| _Fpedigree | LCE_Selection_base | private |
| _get_numFemOffspring | LCE_Breed_Disperse | protected |
| _get_numMalOffspring | LCE_Breed_Disperse | protected |
| _get_patchFecundity | LCE_Breed_Disperse | protected |
| _getFitness | LCE_Selection_base | protected |
| _getRawFitness | LCE_Selection_base | protected |
| _growthRates | LCE_Breed_Disperse | private |
| _gsl_selection_matrix | LCE_Selection_base | private |
| _ind_cntr | LCE_Selection_base | protected |
| _is_absolute | LCE_Selection_base | protected |
| _is_local | LCE_Selection_base | protected |
| _isByNumber | LCE_Disperse_base | private |
| _isForward | LCE_Disperse_base | private |
| _LCELinkedTraitIndex | LifeCycleEvent | protected |
| _LCELinkedTraitType | LifeCycleEvent | protected |
| _letheq | LCE_Selection_base | private |
| _linear_selection_offset | LCE_Selection_base | private |
| _linear_selection_strength | LCE_Selection_base | private |
| _local_optima | LCE_Selection_base | private |
| _make_offspring | LCE_Breed_Disperse | protected |
| _mal_rate | LCE_Disperse_base | private |
| _mating_males | LCE_Breed_base | private |
| _mating_proportion | LCE_Breed_base | private |
| _mating_system | LCE_Breed_base | private |
| _max_fitness | LCE_Selection_base | protected |
| _mean_fecundity | LCE_Breed_base | protected |
| _mean_fitness | LCE_Selection_base | protected |
| _mean_trait_value | LCE_Selection_base | private |
| _NatT0 | LCE_Breed_Disperse | private |
| _nb_trait | LCE_Breed_Selection | private |
| _nonSelectedTraitIndices | LCE_Breed_Selection | private |
| _npatch | LCE_Disperse_base | protected |
| _num_colonizers | LCE_Breed_Disperse | protected |
| _paramSet | SimComponent | protected |
| _popPtr | LifeCycleEvent | protected |
| _prefix | LCE_Disperse_base | private |
| _PropaguleTargets | LCE_Disperse_base | private |
| _rate_of_change_is_std | LCE_Selection_base | private |
| _rate_of_change_local_optima | LCE_Selection_base | private |
| _reducedDispMat | LCE_Disperse_base | protected |
| _reducedDispMatProba | LCE_Disperse_base | protected |
| _res1 | LCE_Selection_base | private |
| _scaling_factor | LCE_Selection_base | protected |
| _sd_fecundity | LCE_Breed_base | private |
| _selection_matrix | LCE_Selection_base | private |
| _selection_variance | LCE_Selection_base | protected |
| _SelectionModels | LCE_Selection_base | protected |
| _selectTraitDimension | LCE_Selection_base | protected |
| _set_std_rate_at_generation | LCE_Selection_base | private |
| _setNewLocalOptima | LCE_Selection_base | protected |
| _setScalingFactor | LCE_Selection_base | protected |
| _stater | LCE_Selection_base | protected |
| _std_rate_reference_patch | LCE_Selection_base | private |
| _survival | LCE_Selection_base | protected |
| _TraitIndices | LCE_Selection_base | protected |
| _Traits | LCE_Selection_base | protected |
| _writer | LCE_Selection_base | protected |
| add_parameter(Param *param) | SimComponent | inlinevirtual |
| add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd) | SimComponent | inlinevirtual |
| add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater) | SimComponent | inlinevirtual |
| addAgeClass() | LCE_Breed_Selection_Disperse | inlinevirtual |
| addParameters(string prefix, ParamUpdaterBase *updater) | LCE_Disperse_base | |
| addPhenotypicSD(unsigned int deme, double *stDev) | LCE_Selection_base | |
| allocateDispMatrix(sex_t sex, unsigned int dim) | LCE_Disperse_base | |
| attach_trait(string trait) | LifeCycleEvent | inlinevirtual |
| breed(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | |
| breed_cloning(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | |
| breed_selection_disperse(int *counter) | LCE_Breed_Selection_Disperse | |
| breed_selection_disperse_propagule(int *counter) | LCE_Breed_Selection_Disperse | |
| changeLocalOptima() | LCE_Selection_base | |
| checkBackwardDispersalMatrix(TMatrix *mat) | LCE_Disperse_base | |
| checkChangeLocalOptima() | LCE_Selection_base | |
| checkCloning(Patch *thePatch) | LCE_Breed_base | inline |
| checkForwardDispersalMatrix(TMatrix *mat) | LCE_Disperse_base | |
| checkMatingCondition(Patch *thePatch) | LCE_Breed_base | inline |
| CheckMatingConditionFuncPtr | LCE_Breed_base | protected |
| checkNoSelfing(Patch *thePatch) | LCE_Breed_base | inline |
| checkPolygyny(Patch *thePatch) | LCE_Breed_base | inline |
| checkSelfing(Patch *thePatch) | LCE_Breed_base | inline |
| clone() | LCE_Breed_Selection_Disperse | inlinevirtual |
| conditionalLogisticGrowth(Patch *patch, sex_t SEX) | LCE_Breed_Disperse | inline |
| conditionalStochasticLogisticGrowth(Patch *patch, sex_t SEX) | LCE_Breed_Disperse | inline |
| do_breed(sex_t SEX, unsigned int size, int *counter, Patch *patch, unsigned int patchID) | LCE_Breed_Selection_Disperse | |
| LCE_Breed_Disperse::do_breed(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | inline |
| do_breed_disperse() | LCE_Breed_Disperse | |
| do_breed_disperse_in_empty_patch(sex_t SEX, Patch *patch, unsigned int ID, unsigned int num_offsprg) | LCE_Breed_Disperse | |
| do_breed_disperse_in_patch(sex_t SEX, Patch *patch, unsigned int ID, unsigned int num_offsprg) | LCE_Breed_Disperse | |
| do_breed_disperse_propagule() | LCE_Breed_Disperse | |
| do_breed_selection_FecFitness(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
| do_breed_selection_OffSurvival(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
| do_breed_selection_WrightFisher_1sex(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
| do_breed_selection_WrightFisher_2sex(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
| DoBreedFuncPtr | LCE_Breed_base | protected |
| doInheritance() | LCE_Breed_base | inline |
| doViabilitySelection(sex_t SEX, age_idx AGE, Patch *patch, unsigned int p) | LCE_Selection_base | |
| execute() | LCE_Breed_Selection_Disperse | virtual |
| exponentialGrowth(Patch *patch, sex_t SEX) | LCE_Breed_Disperse | |
| FecundityFuncPtr | LCE_Breed_base | protected |
| fixedFecundityGrowth(Patch *patch, sex_t SEX) | LCE_Breed_Disperse | inline |
| fullMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| fullPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| fullPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| fullSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| get_event_name() | LifeCycleEvent | inlinevirtual |
| get_name() | SimComponent | inlinevirtual |
| get_parameter(std::string name) | SimComponent | inlinevirtual |
| get_parameter_value(std::string name) | SimComponent | inlinevirtual |
| get_paramset() | SimComponent | inlinevirtual |
| get_parent(sex_t SEX, sex_t DispSex, Patch *LocalPatch, unsigned int patchID, gsl_ran_discrete_t *rates) | LCE_Breed_Disperse | |
| get_pop_ptr() | LifeCycleEvent | inlinevirtual |
| get_rank() | LifeCycleEvent | inlinevirtual |
| getConnectedPatches(sex_t SEX, unsigned int local_patch) | LCE_Disperse_base | |
| getConnectedRates(sex_t SEX, unsigned int local_patch) | LCE_Disperse_base | |
| getDispersalModel() | LCE_Disperse_base | inline |
| getFatherPtr(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inlinevirtual |
| getFecundity(unsigned int patch) | LCE_Breed_base | inline |
| getFecundity(double mean) | LCE_Breed_base | inline |
| getFitness(Individual *ind, unsigned int patch) | LCE_Selection_base | inline |
| getFitnessAbsolute(Individual *ind, unsigned int patch) | LCE_Selection_base | |
| getFitnessDirect(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | inline |
| getFitnessFixedEffect(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | inline |
| getFitnessMultivariateGaussian(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFitnessMultivariateGaussian_VE(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFitnessRelative(Individual *ind, unsigned int patch) | LCE_Selection_base | inline |
| getFitnessUnivariateGaussian(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFitnessUnivariateGaussian_VE(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFitnessUnivariateLinear(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFitnessUnivariateQuadratic(Individual *ind, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
| getFixedFecundity(double mean) | LCE_Breed_base | inline |
| getGaussianFecundity(double mean) | LCE_Breed_base | inline |
| getLocalOptima() const | LCE_Selection_base | inline |
| getLogNormalFecundity(double mean) | LCE_Breed_base | inline |
| getMatingProportion() | LCE_Breed_base | inline |
| getMatingSystem() | LCE_Breed_base | inline |
| getMaxFitness(age_idx age) | LCE_Selection_base | |
| getMaxPatchFitness(age_idx age, unsigned int p) | LCE_Selection_base | |
| getMeanFecundity(unsigned int patch) | LCE_Breed_base | inline |
| getMeanFitness(age_idx age) | LCE_Selection_base | |
| getMeanPatchFitness(age_idx age, unsigned int p) | LCE_Selection_base | |
| getMigrationIndex(vector< double > &rates) | LCE_Disperse_base | |
| getMigrationIndexGSLdiscrete(gsl_ran_discrete_t *rates) | LCE_Disperse_base | |
| getMigrationPatchBackward(sex_t SEX, unsigned int LocalPatch) | LCE_Disperse_base | |
| getMigrationPatchForward(sex_t SEX, unsigned int LocalPatch) | LCE_Disperse_base | |
| GetOffsprgSex | LCE_Breed_base | protected |
| getOffsprgSex() | LCE_Breed_base | inline |
| getOffsprgSexCloning() | LCE_Breed_base | inline |
| getOffsprgSexFixed() | LCE_Breed_base | |
| getOffsprgSexRandom() | LCE_Breed_base | inline |
| getOffsprgSexSelfing() | LCE_Breed_base | inline |
| getPoissonFecundity(double mean) | LCE_Breed_base | inline |
| getPropaguleProb() | LCE_Disperse_base | inline |
| getPropaguleTarget(unsigned int home) | LCE_Disperse_base | inline |
| getReducedDispersalPatchID(sex_t SEX, unsigned int row, unsigned int col) | LCE_Disperse_base | |
| getReducedDispersalRate(sex_t SEX, unsigned int row, unsigned int col) | LCE_Disperse_base | |
| has_parameter(std::string name) | SimComponent | inlinevirtual |
| init(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
| instantGrowth(Patch *patch, sex_t SEX) | LCE_Breed_Disperse | inline |
| isByNumber() | LCE_Disperse_base | inline |
| isForward() | LCE_Disperse_base | inline |
| isWrightFisher() | LCE_Breed_base | inline |
| LCE_Breed_base() | LCE_Breed_base | |
| LCE_Breed_Disperse() | LCE_Breed_Disperse | |
| LCE_Breed_Selection() | LCE_Breed_Selection | |
| LCE_Breed_Selection_Disperse() | LCE_Breed_Selection_Disperse | |
| LCE_Disperse_base() | LCE_Disperse_base | |
| LCE_Selection_base() | LCE_Selection_base | |
| LifeCycleEvent(const char *name, const char *trait_link) | LifeCycleEvent | inline |
| loadFileServices(FileServices *loader) | LCE_Breed_Selection_Disperse | inlinevirtual |
| loadStatServices(StatServices *loader) | LCE_Breed_Selection_Disperse | virtual |
| loadUpdaters(UpdaterServices *loader) | SimComponent | inlinevirtual |
| logisticGrowth(Patch *patch, sex_t SEX) | LCE_Breed_Disperse | inline |
| makeOffspring(Individual *ind) | LCE_Breed_Disperse | |
| makeOffspringWithSelection(Individual *ind, unsigned int natalpatch) | LCE_Breed_Selection | |
| mate_cloning(sex_t SEX, Patch *patch, unsigned int LocalPatch, gsl_ran_discrete_t *rate_fem, gsl_ran_discrete_t *rate_mal) | LCE_Breed_Disperse | |
| mate_full_selfing(sex_t SEX, Patch *patch, unsigned int LocalPatch, gsl_ran_discrete_t *rate_fem, gsl_ran_discrete_t *rate_mal) | LCE_Breed_Disperse | |
| mate_random(sex_t SEX, Patch *patch, unsigned int LocalPatch, gsl_ran_discrete_t *rate_fem, gsl_ran_discrete_t *rate_mal) | LCE_Breed_Disperse | |
| mate_random_hermaphrodite(sex_t SEX, Patch *patch, unsigned int LocalPatch, gsl_ran_discrete_t *rate_fem, gsl_ran_discrete_t *rate_mal) | LCE_Breed_Disperse | |
| mate_selfing(sex_t SEX, Patch *patch, unsigned int LocalPatch, gsl_ran_discrete_t *rate_fem, gsl_ran_discrete_t *rate_mal) | LCE_Breed_Disperse | |
| MatingFuncPtr | LCE_Breed_base | protected |
| NonWrightFisherPopulation() | LCE_Breed_base | |
| numFemOffspring(Patch *patch) | LCE_Breed_Disperse | inline |
| numFemOffspring_colonizers(Patch *patch) | LCE_Breed_Disperse | inline |
| numMalOffspring_notrandom(Patch *patch) | LCE_Breed_Disperse | inline |
| numMalOffspring_random(Patch *patch) | LCE_Breed_Disperse | inline |
| numMalOffspring_random_colonizers(Patch *patch) | LCE_Breed_Disperse | inline |
| partialMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| partialPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| partialPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| partialSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| PopModelFuncPtr | LCE_Breed_base | protected |
| random_hermaphrodite(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| RandomMating(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
| removeAgeClass() | LCE_Breed_Selection_Disperse | inlinevirtual |
| requiredAgeClass() | LCE_Breed_Selection_Disperse | inlinevirtual |
| reset_counters() | LCE_Disperse_base | |
| resetCounters() | LCE_Selection_base | |
| resetParameterFromSource(std::string param, SimComponent *cmpt) | LCE_Breed_Selection_Disperse | inlinevirtual |
| set_event_name(std::string &name) | LifeCycleEvent | inlinevirtual |
| set_event_name(const char *name) | LifeCycleEvent | inlinevirtual |
| set_fit_model() | LCE_Selection_base | |
| set_isForward(bool val) | LCE_Disperse_base | inline |
| set_local_optima() | LCE_Selection_base | |
| set_param_rate_of_change() | LCE_Selection_base | |
| set_paramset(std::string name, bool required, SimComponent *owner) | LifeCycleEvent | inlinevirtual |
| SimComponent::set_paramset(ParamSet *paramset) | SimComponent | inlinevirtual |
| set_paramsetFromCopy(const ParamSet &PSet) | SimComponent | inlinevirtual |
| set_pop_ptr(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
| set_sel_model() | LCE_Selection_base | |
| set_std_rate_of_change() | LCE_Selection_base | |
| setBaseParameters(string prefix) | LCE_Disperse_base | |
| setBasicLatticeMatrix(int rows, int cols, double phi_mal, double phi_fem, double disp_mal, double disp_fem) | LCE_Disperse_base | |
| setDispMatrix() | LCE_Disperse_base | |
| setFecundity() | LCE_Breed_base | |
| setIndentityDispMatrix(TMatrix *mat) | LCE_Disperse_base | |
| setIsland_MigrantPool_Matrix() | LCE_Disperse_base | |
| setIsland_PropagulePool_Matrix() | LCE_Disperse_base | |
| setLatticeAbsorbingMatrix() | LCE_Disperse_base | |
| setLatticeMatrix() | LCE_Disperse_base | |
| setLatticeReflectingMatrix(int rows, int cols, TMatrix *grid) | LCE_Disperse_base | |
| setLatticeTorrusMatrix(int rows, int cols, double disp_mal, double disp_fem, TMatrix *grid) | LCE_Disperse_base | |
| setLocalOptima() | LCE_Selection_base | |
| setMatingSystem() | LCE_Breed_base | |
| setMeanFitness(age_idx age) | LCE_Selection_base | inline |
| setMeans(unsigned int tot_ind) | LCE_Selection_base | |
| setNonSelectedTraitTable() | LCE_Breed_Selection | |
| setParameters() | LCE_Breed_Selection_Disperse | virtual |
| setParamPrefix(string pref) | LCE_Disperse_base | inline |
| setPropaguleTargets() | LCE_Disperse_base | |
| setReducedDispMatrix() | LCE_Disperse_base | |
| setReducedMatricesBySex(sex_t SEX, Param &connectivity, Param &rate) | LCE_Disperse_base | |
| setReproScaledFitness_gsl(sex_t SEX, unsigned int numReproInd, Patch *patch) | LCE_Breed_Selection | |
| setReproScaledFitness_sum(sex_t SEX, valarray< double > &survival, unsigned int numReproFem, Patch *patch) | LCE_Breed_Selection | |
| setScalingFactorAbsolute(age_idx age, unsigned int p) | LCE_Selection_base | inline |
| setScalingFactorForLinearSelection(age_idx age, unsigned int p) | LCE_Selection_base | |
| setScalingFactorGlobal(age_idx age, unsigned int p) | LCE_Selection_base | |
| setScalingFactorLocal(age_idx age, unsigned int p) | LCE_Selection_base | |
| setScalingFactorMaxGlobal(age_idx age, unsigned int p) | LCE_Selection_base | |
| setScalingFactorMaxLocal(age_idx age, unsigned int p) | LCE_Selection_base | |
| setSelectionMatrix() | LCE_Selection_base | |
| setSexRatio() | LCE_Breed_base | |
| setSteppingStone1DMatrix() | LCE_Disperse_base | |
| SimComponent() | SimComponent | inline |
| stochasticFecundityGrowth(Patch *patch, sex_t SEX) | LCE_Breed_Disperse | inline |
| stochasticLogisticGrowth(Patch *patch, sex_t SEX) | LCE_Breed_Disperse | inline |
| swapPostDisp() | LCE_Disperse_base | |
| updateDispMatrix() | LCE_Disperse_base | |
| updateFitnessCounters(double fitness, unsigned int ped_class, bool survived) | LCE_Selection_base | |
| WrightFisherPopulation() | LCE_Breed_base | |
| ~LCE_Breed_base() | LCE_Breed_base | inlinevirtual |
| ~LCE_Breed_Disperse() | LCE_Breed_Disperse | inlinevirtual |
| ~LCE_Breed_Selection() | LCE_Breed_Selection | inlinevirtual |
| ~LCE_Breed_Selection_Disperse() | LCE_Breed_Selection_Disperse | inlinevirtual |
| ~LCE_Disperse_base() | LCE_Disperse_base | virtual |
| ~LCE_Selection_base() | LCE_Selection_base | virtual |
| ~LifeCycleEvent() | LifeCycleEvent | inlinevirtual |
| ~SimComponent() | SimComponent | inlinevirtual |
