LCE_Breed_Selection_Disperse Member List

This is the complete list of members for LCE_Breed_Selection_Disperse, including all inherited members.

_alpha_male	LCE_Breed_base	private
_base_fitness	LCE_Selection_base	protected
_breed_disperse	LCE_Breed_Disperse	private
_breed_selection	LCE_Breed_Selection	private
_breed_selection_disperse	LCE_Breed_Selection_Disperse	private
_diffs	LCE_Selection_base	private
_disp_model	LCE_Disperse_base	private
_disp_propagule_prob	LCE_Disperse_base	private
_dispersing_sex	LCE_Breed_Disperse	private
_DispMatrix	LCE_Disperse_base	private
_do_change_local_opt	LCE_Selection_base	private
_do_inherit	LCE_Breed_base	private
_eVariance	LCE_Selection_base	protected
_event_name	LifeCycleEvent	protected
_fem_rate	LCE_Disperse_base	private
_fitness	LCE_Selection_base	protected
_FitnessFixModel	LCE_Selection_base	private
_Fpedigree	LCE_Selection_base	private
_get_numFemOffspring	LCE_Breed_Disperse	protected
_get_numMalOffspring	LCE_Breed_Disperse	protected
_get_patchFecundity	LCE_Breed_Disperse	protected
_getFitness	LCE_Selection_base	protected
_getRawFitness	LCE_Selection_base	protected
_growthRates	LCE_Breed_Disperse	private
_gsl_selection_matrix	LCE_Selection_base	private
_ind_cntr	LCE_Selection_base	protected
_is_absolute	LCE_Selection_base	protected
_is_local	LCE_Selection_base	protected
_isByNumber	LCE_Disperse_base	private
_isForward	LCE_Disperse_base	private
_LCELinkedTraitIndex	LifeCycleEvent	protected
_LCELinkedTraitType	LifeCycleEvent	protected
_letheq	LCE_Selection_base	protected
_local_optima	LCE_Selection_base	private
_make_offspring	LCE_Breed_Disperse	protected
_mal_rate	LCE_Disperse_base	private
_mating_males	LCE_Breed_base	private
_mating_proportion	LCE_Breed_base	private
_mating_system	LCE_Breed_base	private
_max_fitness	LCE_Selection_base	protected
_mean_fecundity	LCE_Breed_base	protected
_mean_fitness	LCE_Selection_base	protected
_nb_trait	LCE_Breed_Selection	private
_nonSelectedTraitIndices	LCE_Breed_Selection	private
_npatch	LCE_Disperse_base	protected
_num_colonizers	LCE_Breed_Disperse	private
_paramSet	SimComponent	protected
_phe	LCE_Selection_base	private
_popPtr	LifeCycleEvent	protected
_prefix	LCE_Disperse_base	private
_PropaguleTargets	LCE_Disperse_base	private
_rate_of_change_is_std	LCE_Selection_base	private
_rate_of_change_local_optima	LCE_Selection_base	private
_reducedDispMat	LCE_Disperse_base	protected
_reducedDispMatProba	LCE_Disperse_base	protected
_res1	LCE_Selection_base	private
_scaling_factor	LCE_Selection_base	protected
_sd_fecundity	LCE_Breed_base	private
_selection_matrix	LCE_Selection_base	private
_selection_variance	LCE_Selection_base	protected
_SelectionModels	LCE_Selection_base	protected
_selectTraitDimension	LCE_Selection_base	protected
_set_std_rate_at_generation	LCE_Selection_base	private
_setNewLocalOptima	LCE_Selection_base	protected
_setScalingFactor	LCE_Selection_base	protected
_stater	LCE_Selection_base	protected
_std_rate_reference_patch	LCE_Selection_base	private
_survival	LCE_Selection_base	protected
_TraitIndices	LCE_Selection_base	protected
_Traits	LCE_Selection_base	protected
_writer	LCE_Selection_base	protected
add_parameter(Param *param)	SimComponent	inlinevirtual
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd)	SimComponent	inlinevirtual
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater)	SimComponent	inlinevirtual
addAgeClass()	LCE_Breed_Selection_Disperse	inlinevirtual
addParameters(string prefix, ParamUpdaterBase *updater)	LCE_Disperse_base
addPhenotypicSD(unsigned int deme, double *stDev)	LCE_Selection_base
allocateDispMatrix(sex_t sex, unsigned int dim)	LCE_Disperse_base
attach_trait(string trait)	LifeCycleEvent	inlinevirtual
breed(Individual *mother, Individual *father, unsigned int LocalPatch)	LCE_Breed_base
breed_cloning(Individual *mother, Individual *father, unsigned int LocalPatch)	LCE_Breed_base
breed_disperse(sex_t SEX, Patch *patch, unsigned int LocalPatch, unsigned int size)	LCE_Breed_Disperse
breed_selection_disperse(int *counter)	LCE_Breed_Selection_Disperse
breed_selection_disperse_propagule(int *counter)	LCE_Breed_Selection_Disperse
changeLocalOptima()	LCE_Selection_base
checkBackwardDispersalMatrix(TMatrix *mat)	LCE_Disperse_base
checkCloning(Patch *thePatch)	LCE_Breed_base	inline
checkForwardDispersalMatrix(TMatrix *mat)	LCE_Disperse_base
checkMatingCondition(Patch *thePatch)	LCE_Breed_base	inline
CheckMatingConditionFuncPtr	LCE_Breed_base	private
checkNoSelfing(Patch *thePatch)	LCE_Breed_base	inline
checkPolygyny(Patch *thePatch)	LCE_Breed_base	inline
checkSelfing(Patch *thePatch)	LCE_Breed_base	inline
clone()	LCE_Breed_Selection_Disperse	inlinevirtual
conditionalLogisticGrowth(Patch *patch, sex_t SEX)	LCE_Breed_Disperse	inline
conditionalStochasticLogisticGrowth(Patch *patch, sex_t SEX)	LCE_Breed_Disperse	inline
do_breed(sex_t SEX, unsigned int size, int *counter, Patch *patch, unsigned int patchNbr)	LCE_Breed_Selection_Disperse
LCE_Breed_Disperse::do_breed(Individual *mother, Individual *father, unsigned int LocalPatch)	LCE_Breed_base	inline
do_breed_disperse()	LCE_Breed_Disperse
do_breed_disperse_propagule()	LCE_Breed_Disperse
do_breed_selection_FecFitness(Patch *patch, unsigned int patchID, unsigned int *cntr)	LCE_Breed_Selection
do_breed_selection_OffSurvival(Patch *patch, unsigned int patchID, unsigned int *cntr)	LCE_Breed_Selection
do_breed_selection_WrightFisher_1sex(Patch *patch, unsigned int patchID, unsigned int *cntr)	LCE_Breed_Selection
do_breed_selection_WrightFisher_2sex(Patch *patch, unsigned int patchID, unsigned int *cntr)	LCE_Breed_Selection
DoBreedFuncPtr	LCE_Breed_base	private
doInheritance()	LCE_Breed_base	inline
doViabilitySelection(sex_t SEX, age_idx AGE, Patch *patch, unsigned int p)	LCE_Selection_base
execute()	LCE_Breed_Selection_Disperse	virtual
FecundityFuncPtr	LCE_Breed_base	private
fixedFecundityGrowth(Patch *patch, sex_t SEX)	LCE_Breed_Disperse	inline
fullMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inline
fullPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inline
fullPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inline
fullSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inline
get_event_name()	LifeCycleEvent	inlinevirtual
get_name()	SimComponent	inlinevirtual
get_parameter(std::string name)	SimComponent	inlinevirtual
get_parameter_value(std::string name)	SimComponent	inlinevirtual
get_paramset()	SimComponent	inlinevirtual
get_parent(sex_t SEX, sex_t DispSex, Patch *LocalPatch, unsigned int patchNbr)	LCE_Breed_Disperse
get_pop_ptr()	LifeCycleEvent	inlinevirtual
get_rank()	LifeCycleEvent	inlinevirtual
getDispersalModel()	LCE_Disperse_base	inline
getFatherPtr(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inlinevirtual
getFecundity(unsigned int patch)	LCE_Breed_base	inline
getFecundity(double mean)	LCE_Breed_base	inline
getFitness(Individual *ind, unsigned int patch)	LCE_Selection_base	inline
getFitnessAbsolute(Individual *ind, unsigned int patch)	LCE_Selection_base
getFitnessDirect(Individual *offsprg, unsigned int patch, unsigned int trait)	LCE_Selection_base	inline
getFitnessFixedEffect(Individual *offsprg, unsigned int patch, unsigned int trait)	LCE_Selection_base	inline
getFitnessMultivariateGaussian(Individual *offsprg, unsigned int patch, unsigned int trait)	LCE_Selection_base
getFitnessMultivariateGaussian_VE(Individual *offsprg, unsigned int patch, unsigned int trait)	LCE_Selection_base
getFitnessRelative(Individual *ind, unsigned int patch)	LCE_Selection_base	inline
getFitnessUnivariateGaussian(Individual *offsprg, unsigned int patch, unsigned int trait)	LCE_Selection_base
getFitnessUnivariateGaussian_VE(Individual *offsprg, unsigned int patch, unsigned int trait)	LCE_Selection_base
getFitnessUnivariateQuadratic(Individual *ind, unsigned int patch, unsigned int trait)	LCE_Selection_base
getFixedFecundity(double mean)	LCE_Breed_base	inline
getGaussianFecundity(double mean)	LCE_Breed_base	inline
getLogNormalFecundity(double mean)	LCE_Breed_base	inline
getMatingProportion()	LCE_Breed_base	inline
getMatingSystem()	LCE_Breed_base	inline
getMaxFitness(age_idx age)	LCE_Selection_base
getMaxPatchFitness(age_idx age, unsigned int p)	LCE_Selection_base
getMeanFecundity(unsigned int patch)	LCE_Breed_base	inline
getMeanFitness(age_idx age)	LCE_Selection_base
getMeanPatchFitness(age_idx age, unsigned int p)	LCE_Selection_base
getMigrationPatchBackward(sex_t SEX, unsigned int LocalPatch)	LCE_Disperse_base
getMigrationPatchForward(sex_t SEX, unsigned int LocalPatch)	LCE_Disperse_base
getOffsprgSex()	LCE_Breed_base	inline
GetOffsprgSex	LCE_Breed_base	private
getOffsprgSexCloning()	LCE_Breed_base	inline
getOffsprgSexFixed()	LCE_Breed_base
getOffsprgSexRandom()	LCE_Breed_base	inline
getOffsprgSexSelfing()	LCE_Breed_base	inline
getPoissonFecundity(double mean)	LCE_Breed_base	inline
getPropaguleProb()	LCE_Disperse_base	inline
getPropaguleTarget(unsigned int home)	LCE_Disperse_base	inline
has_parameter(std::string name)	SimComponent	inlinevirtual
init(Metapop *popPtr)	LifeCycleEvent	inlinevirtual
instantGrowth(Patch *patch, sex_t SEX)	LCE_Breed_Disperse	inline
isByNumber()	LCE_Disperse_base	inline
isForward()	LCE_Disperse_base	inline
LCE_Breed_base()	LCE_Breed_base
LCE_Breed_Disperse()	LCE_Breed_Disperse
LCE_Breed_Selection()	LCE_Breed_Selection
LCE_Breed_Selection_Disperse()	LCE_Breed_Selection_Disperse
LCE_Disperse_base()	LCE_Disperse_base
LCE_Selection_base()	LCE_Selection_base
LifeCycleEvent(const char *name, const char *trait_link)	LifeCycleEvent	inline
loadFileServices(FileServices *loader)	LCE_Breed_Selection_Disperse	inlinevirtual
loadStatServices(StatServices *loader)	LCE_Breed_Selection_Disperse	virtual
loadUpdaters(UpdaterServices *loader)	SimComponent	inlinevirtual
logisticGrowth(Patch *patch, sex_t SEX)	LCE_Breed_Disperse	inline
makeOffspring(Individual *ind)	LCE_Breed_Disperse
makeOffspringWithSelection(Individual *ind, unsigned int natalpatch)	LCE_Breed_Selection
mate_cloning(sex_t SEX, Patch *patch, unsigned int LocalPatch)	LCE_Breed_Disperse
mate_full_selfing(sex_t SEX, Patch *patch, unsigned int LocalPatch)	LCE_Breed_Disperse
mate_random(sex_t SEX, Patch *patch, unsigned int LocalPatch)	LCE_Breed_Disperse
mate_random_hermaphrodite(sex_t SEX, Patch *patch, unsigned int LocalPatch)	LCE_Breed_Disperse
mate_selfing(sex_t SEX, Patch *patch, unsigned int LocalPatch)	LCE_Breed_Disperse
MatingFuncPtr	LCE_Breed_base	private
NonWrightFisherPopulation()	LCE_Breed_base
numFemOffspring(Patch *patch)	LCE_Breed_Disperse	inline
numFemOffspring_colonizers(Patch *patch)	LCE_Breed_Disperse	inline
numMalOffspring_notrandom(Patch *patch)	LCE_Breed_Disperse	inline
numMalOffspring_random(Patch *patch)	LCE_Breed_Disperse	inline
numMalOffspring_random_colonizers(Patch *patch)	LCE_Breed_Disperse	inline
partialMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inline
partialPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inline
partialPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inline
partialSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inline
PopModelFuncPtr	LCE_Breed_base	protected
random_hermaphrodite(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inline
RandomMating(Patch *thePatch, Individual *mother, unsigned int motherIndex)	LCE_Breed_base	inline
removeAgeClass()	LCE_Breed_Selection_Disperse	inlinevirtual
requiredAgeClass()	LCE_Breed_Selection_Disperse	inlinevirtual
reset_counters()	LCE_Disperse_base
resetCounters()	LCE_Selection_base
resetParameterFromSource(std::string param, SimComponent *cmpt)	LCE_Breed_Selection_Disperse	inlinevirtual
set_event_name(std::string &name)	LifeCycleEvent	inlinevirtual
set_event_name(const char *name)	LifeCycleEvent	inlinevirtual
set_fit_model()	LCE_Selection_base
set_isForward(bool val)	LCE_Disperse_base	inline
set_local_optima()	LCE_Selection_base
set_param_rate_of_change()	LCE_Selection_base
set_paramset(std::string name, bool required, SimComponent *owner)	LifeCycleEvent	inlinevirtual
SimComponent::set_paramset(ParamSet *paramset)	SimComponent	inlinevirtual
set_paramsetFromCopy(const ParamSet &PSet)	SimComponent	inlinevirtual
set_pop_ptr(Metapop *popPtr)	LifeCycleEvent	inlinevirtual
set_sel_model()	LCE_Selection_base
set_std_rate_of_change()	LCE_Selection_base
setBaseParameters(string prefix)	LCE_Disperse_base
setBasicLatticeMatrix(int rows, int cols, double phi_mal, double phi_fem, double disp_mal, double disp_fem)	LCE_Disperse_base
setDispMatrix()	LCE_Disperse_base
setFecundity()	LCE_Breed_base
setIndentityDispMatrix(TMatrix *mat)	LCE_Disperse_base
setIsland_MigrantPool_Matrix()	LCE_Disperse_base
setIsland_PropagulePool_Matrix()	LCE_Disperse_base
setLatticeAbsorbingMatrix()	LCE_Disperse_base
setLatticeMatrix()	LCE_Disperse_base
setLatticeReflectingMatrix(int rows, int cols, TMatrix *grid)	LCE_Disperse_base
setLatticeTorrusMatrix(int rows, int cols, double disp_mal, double disp_fem, TMatrix *grid)	LCE_Disperse_base
setLocalOptima()	LCE_Selection_base
setMatingSystem()	LCE_Breed_base
setMeanFitness(age_idx age)	LCE_Selection_base	inline
setMeans(unsigned int tot_ind)	LCE_Selection_base
setNonSelectedTraitTable()	LCE_Breed_Selection
setParameters()	LCE_Breed_Selection_Disperse	virtual
setParamPrefix(string pref)	LCE_Disperse_base	inline
setPropaguleTargets()	LCE_Disperse_base
setReducedDispMatrix()	LCE_Disperse_base
setReducedMatricesBySex(sex_t SEX, Param &connectivity, Param &rate)	LCE_Disperse_base
setReproScaledFitness_sum(sex_t SEX, valarray< double > &survival, unsigned int numReproFem, Patch *patch)	LCE_Breed_Selection
setScalingFactorAbsolute(age_idx age, unsigned int p)	LCE_Selection_base	inline
setScalingFactorGlobal(age_idx age, unsigned int p)	LCE_Selection_base
setScalingFactorLocal(age_idx age, unsigned int p)	LCE_Selection_base
setScalingFactorMaxGlobal(age_idx age, unsigned int p)	LCE_Selection_base
setScalingFactorMaxLocal(age_idx age, unsigned int p)	LCE_Selection_base
setSelectionMatrix()	LCE_Selection_base
setSexRatio()	LCE_Breed_base
setSteppingStone1DMatrix()	LCE_Disperse_base
SimComponent()	SimComponent	inline
stochasticFecundityGrowth(Patch *patch, sex_t SEX)	LCE_Breed_Disperse	inline
stochasticLogisticGrowth(Patch *patch, sex_t SEX)	LCE_Breed_Disperse	inline
swapPostDisp()	LCE_Disperse_base
updateDispMatrix()	LCE_Disperse_base
WrightFisherPopulation()	LCE_Breed_base
~LCE_Breed_base()	LCE_Breed_base	inlinevirtual
~LCE_Breed_Disperse()	LCE_Breed_Disperse	inlinevirtual
~LCE_Breed_Selection()	LCE_Breed_Selection	inlinevirtual
~LCE_Breed_Selection_Disperse()	LCE_Breed_Selection_Disperse	inlinevirtual
~LCE_Disperse_base()	LCE_Disperse_base	virtual
~LCE_Selection_base()	LCE_Selection_base	virtual
~LifeCycleEvent()	LifeCycleEvent	inlinevirtual
~SimComponent()	SimComponent	inlinevirtual