_disp_model | LCE_Disperse_base | private |
_disp_propagule_prob | LCE_Disperse_base | private |
_DispMatrix | LCE_Disperse_base | private |
_event_name | LifeCycleEvent | protected |
_fdisp_trait_link | LCE_Disperse_EvolDisp | private |
_fem_cost | LCE_Disperse_EvolDisp | private |
_fem_rate | LCE_Disperse_base | private |
_fixed_disp_rate | LCE_Disperse_EvolDisp | private |
_isByNumber | LCE_Disperse_base | private |
_isForward | LCE_Disperse_base | private |
_LCELinkedTraitIndex | LifeCycleEvent | protected |
_LCELinkedTraitType | LifeCycleEvent | protected |
_mal_cost | LCE_Disperse_EvolDisp | private |
_mal_rate | LCE_Disperse_base | private |
_mdisp_trait_link | LCE_Disperse_EvolDisp | private |
_npatch | LCE_Disperse_base | protected |
_paramSet | SimComponent | protected |
_popPtr | LifeCycleEvent | protected |
_prefix | LCE_Disperse_base | private |
_PropaguleTargets | LCE_Disperse_base | private |
_reducedDispMat | LCE_Disperse_base | protected |
_reducedDispMatProba | LCE_Disperse_base | protected |
add_parameter(Param *param) | SimComponent | inlinevirtual |
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd) | SimComponent | inlinevirtual |
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater) | SimComponent | inlinevirtual |
addAgeClass() | LCE_Disperse_base | inlinevirtual |
addParameters(string prefix, ParamUpdaterBase *updater) | LCE_Disperse_base | |
allocateDispMatrix(sex_t sex, unsigned int dim) | LCE_Disperse_base | |
attach_trait(string trait) | LifeCycleEvent | inlinevirtual |
checkBackwardDispersalMatrix(TMatrix *mat) | LCE_Disperse_base | |
checkForwardDispersalMatrix(TMatrix *mat) | LCE_Disperse_base | |
clone() | LCE_Disperse_EvolDisp | inlinevirtual |
evoldisp(sex_t SEX, int trait_link, double cost) | LCE_Disperse_EvolDisp | private |
exec | LCE_Disperse_EvolDisp | private |
exec_evol2sex() | LCE_Disperse_EvolDisp | private |
exec_evolfemale() | LCE_Disperse_EvolDisp | private |
exec_evolmale() | LCE_Disperse_EvolDisp | private |
execute() | LCE_Disperse_EvolDisp | virtual |
fixdisp(sex_t SEX, double rate, double cost) | LCE_Disperse_EvolDisp | private |
get_event_name() | LifeCycleEvent | inlinevirtual |
get_name() | SimComponent | inlinevirtual |
get_parameter(std::string name) | SimComponent | inlinevirtual |
get_parameter_value(std::string name) | SimComponent | inlinevirtual |
get_paramset() | SimComponent | inlinevirtual |
get_pop_ptr() | LifeCycleEvent | inlinevirtual |
get_rank() | LifeCycleEvent | inlinevirtual |
getAimedPatch | LCE_Disperse_EvolDisp | private |
getDispersalModel() | LCE_Disperse_base | inline |
getMigrationPatchBackward(sex_t SEX, unsigned int LocalPatch) | LCE_Disperse_base | |
getMigrationPatchForward(sex_t SEX, unsigned int LocalPatch) | LCE_Disperse_base | |
getPropaguleProb() | LCE_Disperse_base | inline |
getPropaguleTarget(unsigned int home) | LCE_Disperse_base | inline |
has_parameter(std::string name) | SimComponent | inlinevirtual |
init(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
isByNumber() | LCE_Disperse_base | inline |
isForward() | LCE_Disperse_base | inline |
LCE_Disperse_base() | LCE_Disperse_base | |
LCE_Disperse_EvolDisp() | LCE_Disperse_EvolDisp | |
LifeCycleEvent(const char *name, const char *trait_link) | LifeCycleEvent | inline |
loadFileServices(FileServices *loader) | LCE_Disperse_base | inlinevirtual |
loadStatServices(StatServices *loader) | LCE_Disperse_base | inlinevirtual |
loadUpdaters(UpdaterServices *loader) | SimComponent | inlinevirtual |
Migrate_Island(unsigned int home) | LCE_Disperse_EvolDisp | private |
Migrate_Island_Propagule(unsigned int home) | LCE_Disperse_EvolDisp | private |
Migrate_Lattice(unsigned int home) | LCE_Disperse_EvolDisp | private |
Migrate_SteppingStone1D(unsigned int home) | LCE_Disperse_EvolDisp | private |
removeAgeClass() | LCE_Disperse_base | inlinevirtual |
requiredAgeClass() | LCE_Disperse_base | inlinevirtual |
reset_counters() | LCE_Disperse_base | |
resetParameterFromSource(std::string param, SimComponent *cmpt) | LCE_Disperse_base | inlinevirtual |
set_event_name(std::string &name) | LifeCycleEvent | inlinevirtual |
set_event_name(const char *name) | LifeCycleEvent | inlinevirtual |
set_isForward(bool val) | LCE_Disperse_base | inline |
set_paramset(std::string name, bool required, SimComponent *owner) | LifeCycleEvent | inlinevirtual |
SimComponent::set_paramset(ParamSet *paramset) | SimComponent | inlinevirtual |
set_paramsetFromCopy(const ParamSet &PSet) | SimComponent | inlinevirtual |
set_pop_ptr(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
setBaseParameters(string prefix) | LCE_Disperse_base | |
setBasicLatticeMatrix(int rows, int cols, double phi_mal, double phi_fem, double disp_mal, double disp_fem) | LCE_Disperse_base | |
setDispMatrix() | LCE_Disperse_base | |
setIndentityDispMatrix(TMatrix *mat) | LCE_Disperse_base | |
setIsland_MigrantPool_Matrix() | LCE_Disperse_base | |
setIsland_PropagulePool_Matrix() | LCE_Disperse_base | |
setLatticeAbsorbingMatrix() | LCE_Disperse_base | |
setLatticeMatrix() | LCE_Disperse_base | |
setLatticeReflectingMatrix(int rows, int cols, TMatrix *grid) | LCE_Disperse_base | |
setLatticeTorrusMatrix(int rows, int cols, double disp_mal, double disp_fem, TMatrix *grid) | LCE_Disperse_base | |
setParameters() | LCE_Disperse_EvolDisp | virtual |
setParamPrefix(string pref) | LCE_Disperse_base | inline |
setPropaguleTargets() | LCE_Disperse_base | |
setReducedDispMatrix() | LCE_Disperse_base | |
setReducedMatricesBySex(sex_t SEX, Param &connectivity, Param &rate) | LCE_Disperse_base | |
setSteppingStone1DMatrix() | LCE_Disperse_base | |
SimComponent() | SimComponent | inline |
swapPostDisp() | LCE_Disperse_base | |
updateDispMatrix() | LCE_Disperse_base | |
~LCE_Disperse_base() | LCE_Disperse_base | virtual |
~LCE_Disperse_EvolDisp() | LCE_Disperse_EvolDisp | inlinevirtual |
~LifeCycleEvent() | LifeCycleEvent | inlinevirtual |
~SimComponent() | SimComponent | inlinevirtual |