| _currentAge | Metapop | private |
| _currentGeneration | Metapop | private |
| _currentReplicate | Metapop | private |
| _generations | Metapop | private |
| _loader | Metapop | private |
| _mpimgr | Metapop | private |
| _paramSet | SimComponent | protected |
| _patchK | Metapop | private |
| _patchKfem | Metapop | private |
| _patchKmal | Metapop | private |
| _patchNbr | Metapop | private |
| _patchSizes | Metapop | private |
| _protoIndividual | IndFactory | protected |
| _protoTraits | IndFactory | protected |
| _replicates | Metapop | private |
| _requiredAge | Metapop | private |
| _source | Metapop | private |
| _source_filetype | Metapop | private |
| _source_generation | Metapop | private |
| _source_load | Metapop | private |
| _source_load_periodicity | Metapop | private |
| _source_name | Metapop | private |
| _source_param_override | Metapop | private |
| _source_preserve | Metapop | private |
| _source_replicate_digits | Metapop | private |
| _source_replicates | Metapop | private |
| _source_required_age | Metapop | private |
| _source_start_at_replicate | Metapop | private |
| _statHandler | Metapop | private |
| _TraitsIndex | IndFactory | protected |
| _vPatch | Metapop | private |
| _writer | Metapop | private |
| add_parameter(Param *param) | SimComponent | inlinevirtual |
| add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd) | SimComponent | inlinevirtual |
| add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater) | SimComponent | inlinevirtual |
| addPatch(Patch *patch) | Metapop | inline |
| addPatch(unsigned int num) | Metapop | inline |
| BinaryDataLoader::extractPop(std::string &, unsigned int, SimBuilder *, Metapop *) | Metapop | friend |
| buildPatchArray() | Metapop | |
| clear() | Metapop | |
| clearPrototype() | IndFactory | |
| deletePatch(unsigned int i) | Metapop | inline |
| fillPatchFromSource(sex_t SEX, Patch *src, Patch *patch, age_t AGE) | Metapop | |
| fillPopulationFromSource(age_idx AGE, sex_t SEX, deque< Individual * > &src_pool) | Metapop | |
| flush() | Metapop | inline |
| flush(sex_t SEX, age_idx AGE) | Metapop | inline |
| flush(age_idx AGE) | Metapop | inline |
| flush(age_t AGE) | Metapop | inline |
| get(sex_t SEX, age_idx AGE, unsigned int at, unsigned int deme) | Metapop | inline |
| get_name() | SimComponent | inlinevirtual |
| get_parameter(std::string name) | SimComponent | inlinevirtual |
| get_parameter_value(std::string name) | SimComponent | inlinevirtual |
| get_paramset() | SimComponent | inlinevirtual |
| getAllIndividuals(age_idx AGE, deque< Individual * > &fem_pool, deque< Individual * > &mal_pool) | Metapop | |
| getCurrentAge() | Metapop | inline |
| getCurrentGeneration() | Metapop | inline |
| getCurrentReplicate() | Metapop | inline |
| getGenerations() | Metapop | inline |
| getIndividualProtoype() | IndFactory | inline |
| getNewIndividual() | IndFactory | inline |
| getNumAgeClasses() | Metapop | inline |
| getPatch(unsigned int i) | Metapop | inline |
| getPatchArray() | Metapop | inline |
| getPatchArraySize() | Metapop | inline |
| getPatchCapacities() | Metapop | inline |
| getPatchCapacity() | Metapop | inline |
| getPatchCapacity(sex_t SEX, unsigned int patch) | Metapop | inline |
| getPatchKFem() | Metapop | inline |
| getPatchKMal() | Metapop | inline |
| getPatchNbr() | Metapop | inline |
| getPatchPtr(unsigned int patch) | Metapop | inline |
| getPrototypeClone() | IndFactory | inline |
| getReplicates() | Metapop | inline |
| getSourceFileType() | Metapop | inline |
| getSourceName() | Metapop | inline |
| getSourceReplDigits() | Metapop | inline |
| getTraitIndex(trait_t type) | IndFactory | |
| getTraitPrototype(trait_t type) | IndFactory | |
| getTraitPrototypes() | IndFactory | inline |
| has_parameter(std::string name) | SimComponent | inlinevirtual |
| IndFactory() | IndFactory | inline |
| init() | Metapop | |
| isAlive() | Metapop | inline |
| isSourceLoad() | Metapop | inline |
| loadFileServices(FileServices *loader) | Metapop | virtual |
| loadPopFromBinarySource(string &filename) | Metapop | |
| loadPopFromTraitFile(string &filename) | Metapop | |
| loadSourcePopulation() | Metapop | |
| loadStatServices(StatServices *loader) | Metapop | inlinevirtual |
| loadUpdaters(UpdaterServices *loader) | SimComponent | inlinevirtual |
| makeNewIndividual(Individual *mother, Individual *father, sex_t sex, unsigned short homepatch) | IndFactory | |
| makeOffsprg(Individual *mother, Individual *father, sex_t sex, unsigned short homepatch) | IndFactory | |
| makePrototype(map< trait_t, TraitPrototype * > TTlist) | IndFactory | |
| Metapop() | Metapop | |
| move(sex_t SEX, age_idx from_age, unsigned int from_deme, age_idx to_age, unsigned int to_deme, unsigned int at) | Metapop | inline |
| purgeRecyclingPOOL() | IndFactory | inline |
| read_trait(int trait_idx, BinaryStorageBuffer *loader) | Metapop | |
| recycle(Individual *ind) | IndFactory | inline |
| RecyclingPOOL | IndFactory | protected |
| removePatch(unsigned int i) | Metapop | inline |
| reset() | Metapop | |
| resetParameterFromSource(std::string param, SimComponent *cmpt) | Metapop | inlinevirtual |
| resizePatchArray() | Metapop | |
| retrieve_data(BinaryStorageBuffer *reader) | Metapop | virtual |
| set_paramset(ParamSet *paramset) | SimComponent | inlinevirtual |
| set_paramset(std::string name, bool required, SimComponent *owner) | SimComponent | inlinevirtual |
| set_paramsetFromCopy(const ParamSet &PSet) | SimComponent | inlinevirtual |
| setCurrentAge(age_t age) | Metapop | inline |
| setCurrentAge(LifeCycleEvent *LCE) | Metapop | |
| setCurrentGeneration(unsigned int gen) | Metapop | inline |
| setCurrentReplicate(unsigned int repl) | Metapop | inline |
| setGenerations(unsigned int gen) | Metapop | inline |
| setMPImanager(MPImanager *mgr) | Metapop | inline |
| setParameters() | Metapop | virtual |
| setPatchCapacities() | Metapop | |
| setPatchCapacities(string param) | Metapop | |
| setPatchCapacities(sex_t SEX, string param) | Metapop | |
| setPatchCapacities(string paramfem, string parammal) | Metapop | |
| setPatchNbr(unsigned int val) | Metapop | inline |
| setPatchSizes(TMatrix &mat) | Metapop | inline |
| setPopulation(unsigned int currentReplicate, unsigned int replicates) | Metapop | |
| setPopulationFromSource() | Metapop | |
| setPopulationFromSourceInPreserveMode() | Metapop | |
| setPopulationParameters() | Metapop | |
| setReplicates(unsigned int repl) | Metapop | inline |
| setSourceParameters() | Metapop | |
| show_up() | Metapop | |
| SimComponent() | SimComponent | inline |
| size() | Metapop | inline |
| size(sex_t SEX, age_t AGE) | Metapop | inline |
| size(sex_t SEX, age_idx IDX) | Metapop | inline |
| size(age_idx IDX) | Metapop | inline |
| size(age_idx IDX, unsigned int deme) | Metapop | inline |
| size(sex_t SEX, age_idx IDX, unsigned int deme) | Metapop | inline |
| size(sex_t SEX, age_t AGE, unsigned int deme) | Metapop | inline |
| size(age_t AGE) | Metapop | inline |
| size(age_t AGE, unsigned int deme) | Metapop | inline |
| store_data(BinaryStorageBuffer *saver) | Metapop | virtual |
| store_trait(int trait_idx, BinaryStorageBuffer *saver) | Metapop | |
| updatePatchArray() | Metapop | |
| updatePatchState() | Metapop | |
| updatePopulationParameters() | Metapop | |
| ~IndFactory() | IndFactory | virtual |
| ~Metapop() | Metapop | virtual |
| ~SimComponent() | SimComponent | inlinevirtual |
| ~StorableComponent() | StorableComponent | inlinevirtual |
