Metapop Member List

This is the complete list of members for Metapop, including all inherited members.

_currentAge	Metapop	private
_currentGeneration	Metapop	private
_currentReplicate	Metapop	private
_generations	Metapop	private
_loader	Metapop	private
_mpimgr	Metapop	private
_paramSet	SimComponent	protected
_patchK	Metapop	private
_patchKfem	Metapop	private
_patchKmal	Metapop	private
_patchNbr	Metapop	private
_patchSizes	Metapop	private
_protoIndividual	IndFactory	protected
_protoTraits	IndFactory	protected
_replicates	Metapop	private
_requiredAge	Metapop	private
_source	Metapop	private
_source_filetype	Metapop	private
_source_generation	Metapop	private
_source_load	Metapop	private
_source_load_periodicity	Metapop	private
_source_name	Metapop	private
_source_param_override	Metapop	private
_source_preserve	Metapop	private
_source_replicate_digits	Metapop	private
_source_replicates	Metapop	private
_source_required_age	Metapop	private
_source_start_at_replicate	Metapop	private
_statHandler	Metapop	private
_TraitsIndex	IndFactory	protected
_vPatch	Metapop	private
_writer	Metapop	private
add_parameter(Param *param)	SimComponent	inlinevirtual
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd)	SimComponent	inlinevirtual
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater)	SimComponent	inlinevirtual
addPatch(Patch *patch)	Metapop	inline
addPatch(unsigned int num)	Metapop	inline
BinaryDataLoader::extractPop	Metapop	friend
buildPatchArray()	Metapop
clear()	Metapop
clearPrototype()	IndFactory
deletePatch(unsigned int i)	Metapop	inline
fillPatchFromSource(sex_t SEX, Patch *src, Patch *patch, age_t AGE)	Metapop
fillPopulationFromSource(age_idx AGE, sex_t SEX, deque< Individual * > &src_pool)	Metapop
flush()	Metapop	inline
flush(sex_t SEX, age_idx AGE)	Metapop	inline
flush(age_idx AGE)	Metapop	inline
flush(age_t AGE)	Metapop	inline
get(sex_t SEX, age_idx AGE, unsigned int at, unsigned int deme)	Metapop	inline
get_name()	SimComponent	inlinevirtual
get_parameter(std::string name)	SimComponent	inlinevirtual
get_parameter_value(std::string name)	SimComponent	inlinevirtual
get_paramset()	SimComponent	inlinevirtual
getAllIndividuals(age_idx AGE, deque< Individual * > &fem_pool, deque< Individual * > &mal_pool)	Metapop
getCurrentAge()	Metapop	inline
getCurrentGeneration()	Metapop	inline
getCurrentReplicate()	Metapop	inline
getGenerations()	Metapop	inline
getIndividualProtoype()	IndFactory	inline
getNewIndividual()	IndFactory	inline
getPatch(unsigned int i)	Metapop	inline
getPatchArray()	Metapop	inline
getPatchArraySize()	Metapop	inline
getPatchCapacities()	Metapop	inline
getPatchCapacity()	Metapop	inline
getPatchCapacity(sex_t SEX, unsigned int patch)	Metapop	inline
getPatchKFem()	Metapop	inline
getPatchKMal()	Metapop	inline
getPatchNbr()	Metapop	inline
getPatchPtr(unsigned int patch)	Metapop	inline
getPrototypeClone()	IndFactory	inline
getReplicates()	Metapop	inline
getSourceFileType()	Metapop	inline
getSourceName()	Metapop	inline
getSourceReplDigits()	Metapop	inline
getTraitIndex(trait_t type)	IndFactory
getTraitPrototype(trait_t type)	IndFactory
getTraitPrototypes()	IndFactory	inline
has_parameter(std::string name)	SimComponent	inlinevirtual
IndFactory()	IndFactory	inline
init()	Metapop
isAlive()	Metapop	inline
isSourceLoad()	Metapop	inline
loadFileServices(FileServices *loader)	Metapop	virtual
loadPopFromBinarySource(string &filename)	Metapop
loadPopFromTraitFile(string &filename)	Metapop
loadSourcePopulation()	Metapop
loadStatServices(StatServices *loader)	Metapop	inlinevirtual
loadUpdaters(UpdaterServices *loader)	SimComponent	inlinevirtual
makeNewIndividual(Individual *mother, Individual *father, sex_t sex, unsigned short homepatch)	IndFactory
makeOffsprg(Individual *mother, Individual *father, sex_t sex, unsigned short homepatch)	IndFactory
makePrototype(map< trait_t, TraitPrototype * > TTlist)	IndFactory
Metapop()	Metapop
move(sex_t SEX, age_idx from_age, unsigned int from_deme, age_idx to_age, unsigned int to_deme, unsigned int at)	Metapop	inline
purgeRecyclingPOOL()	IndFactory	inline
read_trait(int trait_idx, BinaryStorageBuffer *loader)	Metapop
recycle(Individual *ind)	IndFactory	inline
RecyclingPOOL	IndFactory	protected
removePatch(unsigned int i)	Metapop	inline
reset()	Metapop
resetParameterFromSource(std::string param, SimComponent *cmpt)	Metapop	inlinevirtual
resizePatchArray()	Metapop
retrieve_data(BinaryStorageBuffer *reader)	Metapop	virtual
set_paramset(ParamSet *paramset)	SimComponent	inlinevirtual
set_paramset(std::string name, bool required, SimComponent *owner)	SimComponent	inlinevirtual
set_paramsetFromCopy(const ParamSet &PSet)	SimComponent	inlinevirtual
setCurrentAge(age_t age)	Metapop	inline
setCurrentAge(LifeCycleEvent *LCE)	Metapop
setCurrentGeneration(unsigned int gen)	Metapop	inline
setCurrentReplicate(unsigned int repl)	Metapop	inline
setGenerations(unsigned int gen)	Metapop	inline
setMPImanager(MPImanager *mgr)	Metapop	inline
setParameters()	Metapop	virtual
setPatchCapacities()	Metapop
setPatchCapacities(string param)	Metapop
setPatchCapacities(sex_t SEX, string param)	Metapop
setPatchCapacities(string paramfem, string parammal)	Metapop
setPatchNbr(unsigned int val)	Metapop	inline
setPatchSizes(TMatrix &mat)	Metapop	inline
setPopulation(unsigned int currentReplicate, unsigned int replicates)	Metapop
setPopulationFromSource()	Metapop
setPopulationFromSourceInPreserveMode()	Metapop
setPopulationParameters()	Metapop
setReplicates(unsigned int repl)	Metapop	inline
setSourceParameters()	Metapop
show_up()	Metapop
SimComponent()	SimComponent	inline
size()	Metapop	inline
size(sex_t SEX, age_t AGE)	Metapop	inline
size(sex_t SEX, age_idx IDX)	Metapop	inline
size(age_idx IDX)	Metapop	inline
size(age_idx IDX, unsigned int deme)	Metapop	inline
size(sex_t SEX, age_idx IDX, unsigned int deme)	Metapop	inline
size(sex_t SEX, age_t AGE, unsigned int deme)	Metapop	inline
size(age_t AGE)	Metapop	inline
size(age_t AGE, unsigned int deme)	Metapop	inline
store_data(BinaryStorageBuffer *saver)	Metapop	virtual
store_trait(int trait_idx, BinaryStorageBuffer *saver)	Metapop
updatePatchArray()	Metapop
updatePatchState()	Metapop
updatePopulationParameters()	Metapop
~IndFactory()	IndFactory	virtual
~Metapop()	Metapop	virtual
~SimComponent()	SimComponent	inlinevirtual
~StorableComponent()	StorableComponent	inlinevirtual