| _allParams | ParamManager | protected |
| _components | ComponentManager | protected |
| _currentGeneration | SimRunner | private |
| _currentParams | SimBuilder | protected |
| _currentRankInLifeCycle | SimRunner | private |
| _currentReplicate | SimRunner | private |
| _currentTraits | SimBuilder | protected |
| _do_postexec | SimRunner | private |
| _do_postexec_replicatewise | SimRunner | private |
| _doRun | SimRunner | private |
| _endTime | SimRunner | private |
| _FileServices | SimRunner | |
| _generations | SimRunner | private |
| _inputParams | ParamManager | protected |
| _LCE_Templates | ComponentManager | protected |
| _LifeCycle | SimBuilder | protected |
| _logfile | SimRunner | private |
| _meanGenLength | SimRunner | private |
| _meanReplElapsedTime | SimRunner | private |
| _mode | SimRunner | private |
| _modeArg | SimRunner | private |
| _my_mpi_manager | SimRunner | private |
| _paramSet | ParamManager | protected |
| _ParamUpdaterManager | SimRunner | |
| _postexec_args | SimRunner | private |
| _postexec_script | SimRunner | private |
| _random_seed | SimRunner | private |
| _replicates | SimRunner | private |
| _simElapsedTime | SimRunner | private |
| _simRecords | ParamManager | protected |
| _startTime | SimRunner | private |
| _StatServices | SimRunner | |
| _temporalParams | ParamManager | protected |
| _thePop | SimRunner | private |
| _TTrait_Templates | ComponentManager | protected |
| add_component(SimComponent *cmpt) | ComponentManager | inline |
| add_LCE(LifeCycleEvent *event) | ComponentManager | inline |
| add_paramset(ParamSet *paramset) | ParamManager | inline |
| add_trait(TraitPrototype *trait) | ComponentManager | inline |
| attach_pop(Metapop *pop) | SimRunner | inline |
| build_allParams() | ParamManager | |
| build_component_list() | ComponentManager | |
| build_currentParams(map< string, string > &simparams) | SimBuilder | |
| build_currentTraits() | SimBuilder | |
| build_LifeCycle() | SimBuilder | |
| build_pop() | SimRunner | |
| build_records(map< string, vector< string > > &initParams) | ParamManager | |
| ComponentManager() | ComponentManager | inline |
| Cycle(char *startTime) | SimRunner | |
| get_allParams() | ParamManager | inline |
| get_allRegisteredStats() | SimRunner | inline |
| get_current_event(string &name) | SimBuilder | |
| get_current_eventWithParameter(string ¶m) | SimBuilder | |
| get_current_trait(trait_t type) | SimBuilder | |
| get_current_traitWithParameter(string ¶m) | SimBuilder | |
| get_currentParams() | SimBuilder | inline |
| get_FileServices() | SimRunner | inline |
| get_firstRecord() | ParamManager | inline |
| get_LCE(string name) | ComponentManager | |
| get_nbSims() | ParamManager | inline |
| get_paramset(string &name) | ParamManager | |
| get_pop() | SimRunner | inline |
| get_simRecords() | ParamManager | inline |
| get_StatServices() | SimRunner | inline |
| get_trait(string name) | ComponentManager | |
| getCurrentGeneration() | SimRunner | inline |
| getCurrentRankInLifeCycle() | SimRunner | inline |
| getCurrentReplicate() | SimRunner | inline |
| getFirstRequiredAgeInLifeCycle() | SimBuilder | |
| getGenerations() | SimRunner | inline |
| getReplicates() | SimRunner | inline |
| init() | SimRunner | |
| init_components(map< string, string > &simparams) | SimRunner | |
| init_random_seed() | SimRunner | |
| LCE_ITER typedef | SimBuilder | protected |
| lowercase(string &input) | ParamManager | private |
| param_consistency_check() | ParamManager | |
| ParamManager() | ParamManager | |
| printLog() | SimRunner | |
| printLogHeader() | SimRunner | |
| register_component(SimComponent *cmpt) | SimRunner | |
| register_component_handlers() | SimRunner | |
| Replicate_LOOP() | SimRunner | |
| reset() | SimRunner | |
| reset_services() | SimRunner | |
| run(int ARGC, char **ARGV) | SimRunner | |
| run() | SimRunner | |
| run_event(string &name) | SimRunner | |
| runPostExec() | SimRunner | |
| runPostExecReplicateWise() | SimRunner | |
| set_parameters(map< string, string > &simparams, bool silent) | ParamManager | |
| setArgString(string &fmt, string &arg, unsigned int arg_pos) | ParamManager | private |
| setCurrentGeneration(unsigned int gen) | SimRunner | inline |
| setCurrentReplicate(unsigned int repl) | SimRunner | inline |
| setElapsedTime(clock_t time) | SimRunner | |
| setFilename(string &fstring, unsigned int sim, vector< string > &args, vector< unsigned int > &arg_no, bool check_arg_no) | ParamManager | private |
| setForFirstGeneration() | SimRunner | |
| setGenerations(unsigned int gen) | SimRunner | inline |
| setLifeCycle() | SimRunner | |
| setReplicates(unsigned int repl) | SimRunner | inline |
| SimBuilder() | SimBuilder | inline |
| SimBuilder(const SimBuilder &SB) | SimBuilder | |
| SimRunner(Metapop *pop) | SimRunner | inline |
| step(unsigned int nb_gen) | SimRunner | |
| stripFormatString(string &str, unsigned int &index) | ParamManager | private |
| TRAIT_ITER typedef | SimBuilder | protected |
| ~ComponentManager() | ComponentManager | inline |
| ~ParamManager() | ParamManager | inline |
| ~SimBuilder() | SimBuilder | |
| ~SimRunner() | SimRunner | |
