#include <LCEdisperse.h>

Inheritance diagram for LCE_SeedDisp:

Collaboration diagram for LCE_SeedDisp:

Public Member Functions
	LCE_SeedDisp ()

virtual	~LCE_SeedDisp ()

virtual bool	setParameters ()

virtual LifeCycleEvent *	clone ()

Public Member Functions inherited from LCE_Disperse_ConstDisp
	LCE_Disperse_ConstDisp ()

virtual	~LCE_Disperse_ConstDisp ()

bool	setParameters (string prefix)

void	Migrate ()

void	Migrate_propagule ()

void	MigratePatch (sex_t SEX, unsigned int LocalPatch)

void	MigratePatch_AbsorbingBorder (sex_t SEX, unsigned int LocalPatch)

void	MigratePatchByNumber (sex_t SEX, unsigned int LocalPatch)

virtual void	execute ()

Public Member Functions inherited from LCE_Disperse_base
	LCE_Disperse_base ()

virtual	~LCE_Disperse_base ()
	Deallocates the disp matrix. More...

bool	setBaseParameters (string prefix)

void	setParamPrefix (string pref)

void	addParameters (string prefix, ParamUpdaterBase *updater)

void	setIndentityDispMatrix (TMatrix *mat)

unsigned int	getMigrationPatchForward (sex_t SEX, unsigned int LocalPatch)

unsigned int	getMigrationPatchBackward (sex_t SEX, unsigned int LocalPatch)

unsigned int	getMigrationIndex (vector< double > &rates)

unsigned int	getMigrationIndexGSLdiscrete (gsl_ran_discrete_t *rates)

void	setPropaguleTargets ()

void	swapPostDisp ()

void	reset_counters ()

void	set_isForward (bool val)

bool	checkForwardDispersalMatrix (TMatrix *mat)

bool	checkBackwardDispersalMatrix (TMatrix *mat)

void	allocateDispMatrix (sex_t sex, unsigned int dim)

bool	updateDispMatrix ()

bool	setDispMatrix ()

bool	setReducedMatricesBySex (sex_t SEX, Param &connectivity, Param &rate)

bool	setReducedDispMatrix ()
	The reduced dispersal matrix contains the indices of the patches to which each patch is connected. More...

bool	setIsland_MigrantPool_Matrix ()

bool	setIsland_PropagulePool_Matrix ()

bool	setSteppingStone1DMatrix ()

bool	setLatticeMatrix ()
	Sets the dispersal matrices for the Lattice dispersal model. More...

bool	setBasicLatticeMatrix (int rows, int cols, double phi_mal, double phi_fem, double disp_mal, double disp_fem)

bool	setLatticeTorrusMatrix (int rows, int cols, double disp_mal, double disp_fem, TMatrix *grid)

bool	setLatticeAbsorbingMatrix ()

bool	setLatticeReflectingMatrix (int rows, int cols, TMatrix *grid)

bool	isForward ()

bool	isByNumber ()

unsigned int	getDispersalModel ()

double	getPropaguleProb ()

unsigned int	getPropaguleTarget (unsigned int home)

vector< double >	getConnectedPatches (sex_t SEX, unsigned int local_patch)

vector< double >	getConnectedRates (sex_t SEX, unsigned int local_patch)

double	getReducedDispersalRate (sex_t SEX, unsigned int row, unsigned int col)

unsigned int	getReducedDispersalPatchID (sex_t SEX, unsigned int row, unsigned int col)

virtual void	loadFileServices (FileServices *loader)

virtual void	loadStatServices (StatServices *loader)

virtual bool	resetParameterFromSource (std::string param, SimComponent *cmpt)

virtual age_t	removeAgeClass ()

virtual age_t	addAgeClass ()

virtual age_t	requiredAgeClass ()

Public Member Functions inherited from LifeCycleEvent
	LifeCycleEvent (const char name, const char trait_link)
	Cstor. More...

virtual	~LifeCycleEvent ()

virtual void	init (Metapop *popPtr)
	Sets the pointer to the current Metapop and the trait link if applicable. More...

virtual bool	attach_trait (string trait)

virtual void	set_paramset (std::string name, bool required, SimComponent *owner)

virtual void	set_event_name (std::string &name)
	Set the name of the event (name of the ParamSet) and add the corresponding parameter to the set. More...

virtual void	set_event_name (const char *name)

virtual string &	get_event_name ()
	Accessor to the LCE's name. More...

virtual int	get_rank ()
	Accessor to the LCE rank in the life cycle. More...

virtual void	set_pop_ptr (Metapop *popPtr)
	Accessors for the population pointer. More...

virtual Metapop *	get_pop_ptr ()

Public Member Functions inherited from SimComponent
	SimComponent ()

virtual	~SimComponent ()

virtual void	loadUpdaters (UpdaterServices *loader)
	Loads the parameters and component updater onto the updater manager. More...

virtual void	set_paramset (ParamSet *paramset)
	Sets the ParamSet member. More...

virtual void	set_paramsetFromCopy (const ParamSet &PSet)
	Reset the set of parameters from a another set. More...

virtual ParamSet *	get_paramset ()
	ParamSet accessor. More...

virtual void	add_parameter (Param *param)
	Interface to add a parameter to the set. More...

virtual void	add_parameter (std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd)
	Interface to add a parameter to the set. More...

virtual void	add_parameter (std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater)
	Interface to add a parameter and its updater to the set. More...

virtual Param *	get_parameter (std::string name)
	Param getter. More...

virtual double	get_parameter_value (std::string name)
	Param value getter. More...

virtual string	get_name ()
	Returnd the name of the ParamSet, i.e. More...

virtual bool	has_parameter (std::string name)
	Param getter. More...

Additional Inherited Members
Protected Attributes inherited from LCE_Disperse_base
unsigned int	_npatch
	Number of patches in the population. More...

vector< vector< double > >	_reducedDispMat [2]
	Matrix containing the indexes of the patches connected to each patch. More...

vector< vector< double > >	_reducedDispMatProba [2]
	Matrix containing the probability to migrate to/from the connected patches. More...

Protected Attributes inherited from LifeCycleEvent
std::string	_event_name
	The param name to be read in the init file. More...

Metapop *	_popPtr
	The ptr to the current Metapop. More...

std::string	_LCELinkedTraitType
	The name of the linked trait. More...

int	_LCELinkedTraitIndex
	The index in the individual's trait table of the linked trait. More...

Protected Attributes inherited from SimComponent
ParamSet *	_paramSet
	The parameters container. More...

Constructor & Destructor Documentation

◆ LCE_SeedDisp()

LCE_SeedDisp::LCE_SeedDisp ( )

                             : LifeCycleEvent ("seed_disperse","")
 {
   ParamUpdater<LCE_SeedDisp> * updater =
       new ParamUpdater<LCE_SeedDisp> (&LCE_SeedDisp::setParameters);
  
   set_event_name("seed_disperse"); //this resets the paramset, erases the params added by LCE_Disperse_ConstDisp
  
   addParameters("seed_disperse", updater);
  
 }