_current_filename | FileHandler | private |
_current_generation | FileHandler | private |
_current_replicate | FileHandler | private |
_ExecRank | FileHandler | private |
_extension | FileHandler | private |
_FHLinkedTrait | TraitFileHandler< TProtoNeutralGenes > | protected |
_FHLinkedTraitIndex | TraitFileHandler< TProtoNeutralGenes > | protected |
_GenerationOccurrence | FileHandler | private |
_generations | FileHandler | private |
_genITER | FileHandler | private |
_isGenerationPeriodic | FileHandler | private |
_isInputHandler | FileHandler | private |
_isMasterExec | FileHandler | private |
_isReplicatePeriodic | FileHandler | private |
_multipleOccurences | FileHandler | private |
_output_option | TTNeutralGenesFH | private |
_path | FileHandler | private |
_pop | FileHandler | protected |
_ReplicateOccurrence | FileHandler | private |
_service | FileHandler | private |
FHread(string &filename) | TTNeutralGenesFH | virtual |
TraitFileHandler< TProtoNeutralGenes >::FHread(string &filename)=0 | TraitFileHandler< TProtoNeutralGenes > | pure virtual |
FHwrite() | TTNeutralGenesFH | virtual |
FileHandler(const char *ext) | FileHandler | inline |
get_ExecRank() | FileHandler | inline |
get_extension() | FileHandler | inline |
get_filename() | FileHandler | |
get_GenerationOccurrence() | FileHandler | inline |
get_isGenerationPeriodic() | FileHandler | inline |
get_isInputHandler() | FileHandler | inline |
get_isMasterExec() | FileHandler | inline |
get_isReplicatePeriodic() | FileHandler | inline |
get_OccMatrix() | FileHandler | inline |
get_path() | FileHandler | inline |
get_pop_ptr() | FileHandler | inline |
get_ReplicateOccurrence() | FileHandler | inline |
get_service() | FileHandler | inline |
ifExist() | FileHandler | virtual |
init() | FileHandler | virtual |
print_PLINK_PED(ofstream &FH, age_idx Ax, Patch *patch) | TTNeutralGenesFH | |
set(bool rpl_per, bool gen_per, int rpl_occ, int gen_occ, int rank, string path, TProtoNeutralGenes *trait_proto) | TraitFileHandler< TProtoNeutralGenes > | virtual |
FileHandler::set(bool rpl_per, bool gen_per, int rpl_occ, int gen_occ, int rank, string path) | FileHandler | inlinevirtual |
set_ExecRank(int val) | FileHandler | inline |
set_extension(const char *ext) | FileHandler | inline |
set_GenerationOccurrence(unsigned int val) | FileHandler | inline |
set_isGenerationPeriodic(bool val) | FileHandler | inline |
set_isInputHandler(bool val) | FileHandler | inline |
set_isMasterExec(bool is) | FileHandler | inline |
set_isReplicatePeriodic(bool val) | FileHandler | inline |
set_multi(bool rpl_per, bool gen_per, int rpl_occ, TMatrix *Occ, string path) | FileHandler | inlinevirtual |
set_OccMatrix(TMatrix *occ) | FileHandler | inline |
set_path() | FileHandler | |
set_pop_ptr(Metapop *pop_ptr) | FileHandler | inline |
set_ReplicateOccurrence(unsigned int val) | FileHandler | inline |
set_service(FileServices *srv) | FileHandler | inline |
set_write_fct(void(TTNeutralGenesFH::*fct_ptr)()) | TTNeutralGenesFH | inline |
setOutputOption(string opt) | TTNeutralGenesFH | |
TraitFileHandler(TProtoNeutralGenes *trait_proto, const char *ext) | TraitFileHandler< TProtoNeutralGenes > | |
TTNeutralGenesFH(TProtoNeutralGenes *TP) | TTNeutralGenesFH | inline |
update() | FileHandler | virtual |
write_fct | TTNeutralGenesFH | private |
write_Fst_i() | TTNeutralGenesFH | |
write_FSTAT() | TTNeutralGenesFH | |
write_GENEPOP() | TTNeutralGenesFH | |
write_patch_FSTAT(Patch *patch, sex_t SEX, age_idx AGE, ofstream &FH, unsigned int digits) | TTNeutralGenesFH | |
write_patch_GENEPOP(Patch *patch, sex_t SEX, age_idx AGE, ofstream &FH, unsigned int digits) | TTNeutralGenesFH | |
write_patch_TAB(Patch *patch, sex_t SEX, age_idx AGE, ofstream &FH) | TTNeutralGenesFH | |
write_PLINK() | TTNeutralGenesFH | |
write_PLINK_BED(ofstream &BED) | TTNeutralGenesFH | |
write_TAB() | TTNeutralGenesFH | |
write_varcompWC() | TTNeutralGenesFH | |
~FileHandler() | FileHandler | inlinevirtual |
~Handler() | Handler | inlinevirtual |
~TraitFileHandler() | TraitFileHandler< TProtoNeutralGenes > | inlinevirtual |
~TTNeutralGenesFH() | TTNeutralGenesFH | inlinevirtual |