TTNeutralGenesSH Member List

This is the complete list of members for TTNeutralGenesSH, including all inherited members.

_alleleCountTable	TTNeutralGenesSH	private
_alleleFreqTable	TTNeutralGenesSH	private
_coa_matrix	TTNeutralGenesSH	private
_D	TTNeutralGenesSH	private
_fis	TTNeutralGenesSH	private
_fis_WC	TTNeutralGenesSH	private
_fis_WC_loc	TTNeutralGenesSH	private
_fit	TTNeutralGenesSH	private
_fit_WC	TTNeutralGenesSH	private
_fit_WC_loc	TTNeutralGenesSH	private
_fix_loc_global	TTNeutralGenesSH	private
_fix_loc_local	TTNeutralGenesSH	private
_fst	TTNeutralGenesSH	private
_fst_matrix	TTNeutralGenesSH	private
_fst_W1	TTNeutralGenesSH	private
_fst_W2	TTNeutralGenesSH	private
_fst_WC	TTNeutralGenesSH	private
_fst_WC_loc	TTNeutralGenesSH	private
_fst_WH	TTNeutralGenesSH	private
_globalAlleleFreq	TTNeutralGenesSH	private
_heteroTable	TTNeutralGenesSH	private
_ho	TTNeutralGenesSH	private
_hs	TTNeutralGenesSH	private
_hsnei	TTNeutralGenesSH	private
_ht	TTNeutralGenesSH	private
_htnei	TTNeutralGenesSH	private
_mean_alpha	TTNeutralGenesSH	private
_mean_theta	TTNeutralGenesSH	private
_meanD	TTNeutralGenesSH	private
_nb_all_global	TTNeutralGenesSH	private
_nb_all_local	TTNeutralGenesSH	private
_pop	StatHandlerBase	protected
_recorders	StatHandler< SH >	protected
_service	StatHandlerBase	private
_SHLinkedTrait	TraitStatHandler< TProtoNeutralGenes, TTNeutralGenesSH >	protected
_SHLinkedTraitIndex	TraitStatHandler< TProtoNeutralGenes, TTNeutralGenesSH >	protected
_sib_coa	TTNeutralGenesSH	private
_sib_prop	TTNeutralGenesSH	private
_stats	StatHandlerBase	private
_table_set_age	TTNeutralGenesSH	private
_table_set_gen	TTNeutralGenesSH	private
_table_set_repl	TTNeutralGenesSH	private
add(std::string Title, std::string Name, age_t AGE, unsigned int ARG1, unsigned int ARG2, double(SH::*getStatNoArg)(void), double(SH::*getStatOneArg)(unsigned int), double(SH::*getStatTwoArg)(unsigned int, unsigned int), void(SH::*setStat)(void))	StatHandler< SH >	inlinevirtual
StatHandlerBase::add(StatRecBase *rec)	StatHandlerBase	inlinevirtual
allocateTables(unsigned int loci, unsigned int all)	TTNeutralGenesSH
clear()	StatHandler< SH >	inlinevirtual
Coancestry(void **ind1, void **ind2, unsigned int nb_locus)	TTNeutralGenesSH
get_pop_ptr()	StatHandlerBase	inline
get_service()	StatHandlerBase	inline
getAlleleCountTable()	TTNeutralGenesSH	inline
getAlleleFreqTable()	TTNeutralGenesSH	inline
getCoa(unsigned int i)	TTNeutralGenesSH	inline
getCurrentOccurrence()	StatHandlerBase	inline
getDxy(unsigned int age_class)	TTNeutralGenesSH
getDxyAdultPerPatch(unsigned int patch1, unsigned patch2)	TTNeutralGenesSH	inline
getDxyOffspringPerPatch(unsigned int patch1, unsigned patch2)	TTNeutralGenesSH	inline
getDxyPerPatch(age_idx age, unsigned int patch1, unsigned patch2)	TTNeutralGenesSH
getFis()	TTNeutralGenesSH	inline
getFisWC()	TTNeutralGenesSH	inline
getFit()	TTNeutralGenesSH	inline
getFitWC()	TTNeutralGenesSH	inline
getFixLocGlobal()	TTNeutralGenesSH	inline
getFixLocLocal()	TTNeutralGenesSH	inline
getFst()	TTNeutralGenesSH	inline
getFst_ij(unsigned int i)	TTNeutralGenesSH	inline
getFstWC()	TTNeutralGenesSH	inline
getGlobalAlleleFreq(unsigned int loc, unsigned int all)	TTNeutralGenesSH	inline
getGlobalFreqs()	TTNeutralGenesSH	inline
getHeteroTable()	TTNeutralGenesSH	inline
getHeterozygosity(unsigned int loc)	TTNeutralGenesSH	inline
getHo()	TTNeutralGenesSH	inline
getHs()	TTNeutralGenesSH	inline
getHsnei()	TTNeutralGenesSH	inline
getHt()	TTNeutralGenesSH	inline
getHtnei()	TTNeutralGenesSH	inline
getMeanAlpha()	TTNeutralGenesSH	inline
getMeanNeiGeneticDistance()	TTNeutralGenesSH	inline
getMeanTheta()	TTNeutralGenesSH	inline
getNbAllGlobal()	TTNeutralGenesSH	inline
getNbAllLocal()	TTNeutralGenesSH	inline
getNbRecorders()	StatHandlerBase	inline
getNeiGeneticDistance(unsigned int i)	TTNeutralGenesSH	inline
getNumOccurrences()	StatHandlerBase	inline
getOccurrence()	StatHandlerBase	inline
getSibCoaMeans(unsigned int i)	TTNeutralGenesSH	inline
getSibProportions(unsigned int i)	TTNeutralGenesSH	inline
getStats()	StatHandlerBase	inline
getTheta_FF()	TTNeutralGenesSH	inline
getTheta_FM()	TTNeutralGenesSH	inline
getTheta_MM()	TTNeutralGenesSH	inline
getWeightedFst()	TTNeutralGenesSH	inline
init()	TTNeutralGenesSH	virtual
REC_IT typedef	StatHandler< SH >	protected
reset()	StatHandlerBase	virtual
set_service(StatServices *srv)	StatHandlerBase	inline
setAdltNeiGeneticDistance()	TTNeutralGenesSH	inline
setAdultAlleleFreq()	TTNeutralGenesSH	inline
setAdultHeterozygosity()	TTNeutralGenesSH	inline
setAdults_Theta()	TTNeutralGenesSH
setAdultsCoaBetween()	TTNeutralGenesSH	inline
setAdultsCoaMatrix()	TTNeutralGenesSH	inline
setAdultsCoaWithin()	TTNeutralGenesSH	inline
setAdultsFstat()	TTNeutralGenesSH	inline
setAdultsFstat2()	TTNeutralGenesSH	inline
setAdultsFstatWeirCockerham()	TTNeutralGenesSH	inline
setAdultsFstBetween()	TTNeutralGenesSH	inline
setAdultsFstMatrix()	TTNeutralGenesSH	inline
setAdultsFstWithin()	TTNeutralGenesSH	inline
setAlleleTables(age_t AGE)	TTNeutralGenesSH
setCoaMatrix(age_idx age_pos, unsigned char dim)	TTNeutralGenesSH
setCoaMatrixRecorders(age_t AGE, unsigned char dim)	TTNeutralGenesSH
setDxyRecorders(age_t AGE, bool patchwise)	TTNeutralGenesSH
setFreqRecorders(age_t AGE)	TTNeutralGenesSH
setFreqRecordersPerPatch(age_t AGE)	TTNeutralGenesSH
setFst_li(unsigned int N, unsigned int L, double **array)	TTNeutralGenesSH
setFstat(age_t AGE)	TTNeutralGenesSH
setFstat2(age_t AGE)	TTNeutralGenesSH
setFstat2Recorders(age_t AGE)	TTNeutralGenesSH
setFstatRecorders(age_t AGE)	TTNeutralGenesSH
setFstatWCRecorders(age_t AGE)	TTNeutralGenesSH
setFstatWeirCockerham(age_t AGE)	TTNeutralGenesSH
setFstatWeirCockerham_MS(age_t AGE)	TTNeutralGenesSH
setFstMatrix(age_t AGE, unsigned char dim)	TTNeutralGenesSH
setFstMatrixRecorders(age_t AGE, unsigned char dim)	TTNeutralGenesSH
setHeteroTable(age_t AGE)	TTNeutralGenesSH
setHeterozygosity(age_t AGE)	TTNeutralGenesSH
setHo(age_idx age_pos)	TTNeutralGenesSH
setHo2(age_idx age_pos)	TTNeutralGenesSH
setHs(age_idx age_pos)	TTNeutralGenesSH
setHs2(age_idx age_pos)	TTNeutralGenesSH
setHt(age_idx age_pos)	TTNeutralGenesSH
setHt2(age_idx age_pos)	TTNeutralGenesSH
setLociDivCounter(age_t AGE)	TTNeutralGenesSH
setNeiGeneticDistance(age_t AGE)	TTNeutralGenesSH
setNeiGeneticDistanceRecorders(age_t AGE, bool pairwise)	TTNeutralGenesSH
setOffsprgCoaBetween()	TTNeutralGenesSH	inline
setOffsprgCoaMatrix()	TTNeutralGenesSH	inline
setOffsprgCoaWithin()	TTNeutralGenesSH	inline
setOffsprgFstat()	TTNeutralGenesSH	inline
setOffsprgFstat2()	TTNeutralGenesSH	inline
setOffsprgFstBetween()	TTNeutralGenesSH	inline
setOffsprgFstMatrix()	TTNeutralGenesSH	inline
setOffsprgFstWithin()	TTNeutralGenesSH	inline
setOffsprgNeiGeneticDistance()	TTNeutralGenesSH	inline
setOffspringAlleleFreq()	TTNeutralGenesSH	inline
setOffspringFstatWeirCockerham()	TTNeutralGenesSH	inline
setOffspringHeterozygosity()	TTNeutralGenesSH	inline
setSibCoa(Individual *I1, Individual *I2)	TTNeutralGenesSH
setSibStats()	TTNeutralGenesSH
setStatRecorders(std::string &token)	TTNeutralGenesSH	virtual
STAT_IT typedef	StatHandlerBase	private
StatHandler()	StatHandler< SH >	inline
StatHandlerBase()	StatHandlerBase	inline
Theta_FF	TTNeutralGenesSH	private
Theta_FM	TTNeutralGenesSH	private
Theta_MM	TTNeutralGenesSH	private
TraitStatHandler(TProtoNeutralGenes *trait_proto)	TraitStatHandler< TProtoNeutralGenes, TTNeutralGenesSH >
TTNeutralGenesSH(TProtoNeutralGenes *TP)	TTNeutralGenesSH	inline
update()	StatHandlerBase	inlinevirtual
~Handler()	Handler	inlinevirtual
~StatHandler()	StatHandler< SH >	inlinevirtual
~StatHandlerBase()	StatHandlerBase	inlinevirtual
~TraitStatHandler()	TraitStatHandler< TProtoNeutralGenes, TTNeutralGenesSH >	inlinevirtual
~TTNeutralGenesSH()	TTNeutralGenesSH	inlinevirtual