| _alleleCountTable | TTNeutralGenesSH | private |
| _alleleFreqTable | TTNeutralGenesSH | private |
| _coa_matrix | TTNeutralGenesSH | private |
| _D | TTNeutralGenesSH | private |
| _fis | TTNeutralGenesSH | private |
| _fis_WC | TTNeutralGenesSH | private |
| _fis_WC_loc | TTNeutralGenesSH | private |
| _fit | TTNeutralGenesSH | private |
| _fit_WC | TTNeutralGenesSH | private |
| _fit_WC_loc | TTNeutralGenesSH | private |
| _fix_loc_global | TTNeutralGenesSH | private |
| _fix_loc_local | TTNeutralGenesSH | private |
| _fst | TTNeutralGenesSH | private |
| _fst_matrix | TTNeutralGenesSH | private |
| _fst_W1 | TTNeutralGenesSH | private |
| _fst_W2 | TTNeutralGenesSH | private |
| _fst_WC | TTNeutralGenesSH | private |
| _fst_WC_loc | TTNeutralGenesSH | private |
| _fst_WH | TTNeutralGenesSH | private |
| _globalAlleleFreq | TTNeutralGenesSH | private |
| _heteroTable | TTNeutralGenesSH | private |
| _ho | TTNeutralGenesSH | private |
| _hs | TTNeutralGenesSH | private |
| _hsnei | TTNeutralGenesSH | private |
| _ht | TTNeutralGenesSH | private |
| _htnei | TTNeutralGenesSH | private |
| _mean_alpha | TTNeutralGenesSH | private |
| _mean_theta | TTNeutralGenesSH | private |
| _meanD | TTNeutralGenesSH | private |
| _nb_all_global | TTNeutralGenesSH | private |
| _nb_all_local | TTNeutralGenesSH | private |
| _pop | StatHandlerBase | protected |
| _recorders | StatHandler< SH > | protected |
| _service | StatHandlerBase | private |
| _SHLinkedTrait | TraitStatHandler< TProtoNeutralGenes, TTNeutralGenesSH > | protected |
| _SHLinkedTraitIndex | TraitStatHandler< TProtoNeutralGenes, TTNeutralGenesSH > | protected |
| _sib_coa | TTNeutralGenesSH | private |
| _sib_prop | TTNeutralGenesSH | private |
| _stats | StatHandlerBase | private |
| _table_set_age | TTNeutralGenesSH | private |
| _table_set_gen | TTNeutralGenesSH | private |
| _table_set_repl | TTNeutralGenesSH | private |
| add(std::string Title, std::string Name, age_t AGE, unsigned int ARG1, unsigned int ARG2, double(SH::*getStatNoArg)(void), double(SH::*getStatOneArg)(unsigned int), double(SH::*getStatTwoArg)(unsigned int, unsigned int), void(SH::*setStat)(void)) | StatHandler< SH > | inlinevirtual |
| StatHandlerBase::add(StatRecBase *rec) | StatHandlerBase | inlinevirtual |
| allocateTables(unsigned int loci, unsigned int all) | TTNeutralGenesSH | |
| clear() | StatHandler< SH > | inlinevirtual |
| Coancestry(void **ind1, void **ind2, unsigned int nb_locus) | TTNeutralGenesSH | |
| get_pop_ptr() | StatHandlerBase | inline |
| get_service() | StatHandlerBase | inline |
| getAlleleCountTable() | TTNeutralGenesSH | inline |
| getAlleleFreqTable() | TTNeutralGenesSH | inline |
| getCoa(unsigned int i) | TTNeutralGenesSH | inline |
| getCurrentOccurrence() | StatHandlerBase | inline |
| getDxy(unsigned int age_class) | TTNeutralGenesSH | |
| getDxyAdultPerPatch(unsigned int patch1, unsigned patch2) | TTNeutralGenesSH | inline |
| getDxyOffspringPerPatch(unsigned int patch1, unsigned patch2) | TTNeutralGenesSH | inline |
| getDxyPerPatch(age_idx age, unsigned int patch1, unsigned patch2) | TTNeutralGenesSH | |
| getFis() | TTNeutralGenesSH | inline |
| getFisWC() | TTNeutralGenesSH | inline |
| getFit() | TTNeutralGenesSH | inline |
| getFitWC() | TTNeutralGenesSH | inline |
| getFixLocGlobal() | TTNeutralGenesSH | inline |
| getFixLocLocal() | TTNeutralGenesSH | inline |
| getFst() | TTNeutralGenesSH | inline |
| getFst_ij(unsigned int i) | TTNeutralGenesSH | inline |
| getFstWC() | TTNeutralGenesSH | inline |
| getGlobalAlleleFreq(unsigned int loc, unsigned int all) | TTNeutralGenesSH | inline |
| getGlobalFreqs() | TTNeutralGenesSH | inline |
| getHeteroTable() | TTNeutralGenesSH | inline |
| getHeterozygosity(unsigned int loc) | TTNeutralGenesSH | inline |
| getHo() | TTNeutralGenesSH | inline |
| getHs() | TTNeutralGenesSH | inline |
| getHsnei() | TTNeutralGenesSH | inline |
| getHt() | TTNeutralGenesSH | inline |
| getHtnei() | TTNeutralGenesSH | inline |
| getMeanAlpha() | TTNeutralGenesSH | inline |
| getMeanNeiGeneticDistance() | TTNeutralGenesSH | inline |
| getMeanTheta() | TTNeutralGenesSH | inline |
| getNbAllGlobal() | TTNeutralGenesSH | inline |
| getNbAllLocal() | TTNeutralGenesSH | inline |
| getNbRecorders() | StatHandlerBase | inline |
| getNeiGeneticDistance(unsigned int i) | TTNeutralGenesSH | inline |
| getNumOccurrences() | StatHandlerBase | inline |
| getOccurrence() | StatHandlerBase | inline |
| getSibCoaMeans(unsigned int i) | TTNeutralGenesSH | inline |
| getSibProportions(unsigned int i) | TTNeutralGenesSH | inline |
| getStats() | StatHandlerBase | inline |
| getTheta_FF() | TTNeutralGenesSH | inline |
| getTheta_FM() | TTNeutralGenesSH | inline |
| getTheta_MM() | TTNeutralGenesSH | inline |
| getWeightedFst() | TTNeutralGenesSH | inline |
| init() | TTNeutralGenesSH | virtual |
| REC_IT typedef | StatHandler< SH > | protected |
| reset() | StatHandlerBase | virtual |
| set_service(StatServices *srv) | StatHandlerBase | inline |
| setAdltNeiGeneticDistance() | TTNeutralGenesSH | inline |
| setAdultAlleleFreq() | TTNeutralGenesSH | inline |
| setAdultHeterozygosity() | TTNeutralGenesSH | inline |
| setAdults_Theta() | TTNeutralGenesSH | |
| setAdultsCoaBetween() | TTNeutralGenesSH | inline |
| setAdultsCoaMatrix() | TTNeutralGenesSH | inline |
| setAdultsCoaWithin() | TTNeutralGenesSH | inline |
| setAdultsFstat() | TTNeutralGenesSH | inline |
| setAdultsFstat2() | TTNeutralGenesSH | inline |
| setAdultsFstatWeirCockerham() | TTNeutralGenesSH | inline |
| setAdultsFstBetween() | TTNeutralGenesSH | inline |
| setAdultsFstMatrix() | TTNeutralGenesSH | inline |
| setAdultsFstWithin() | TTNeutralGenesSH | inline |
| setAlleleTables(age_t AGE) | TTNeutralGenesSH | |
| setCoaMatrix(age_idx age_pos, unsigned char dim) | TTNeutralGenesSH | |
| setCoaMatrixRecorders(age_t AGE, unsigned char dim) | TTNeutralGenesSH | |
| setDxyRecorders(age_t AGE, bool patchwise) | TTNeutralGenesSH | |
| setFreqRecorders(age_t AGE) | TTNeutralGenesSH | |
| setFreqRecordersPerPatch(age_t AGE) | TTNeutralGenesSH | |
| setFst_li(unsigned int N, unsigned int L, double **array) | TTNeutralGenesSH | |
| setFstat(age_t AGE) | TTNeutralGenesSH | |
| setFstat2(age_t AGE) | TTNeutralGenesSH | |
| setFstat2Recorders(age_t AGE) | TTNeutralGenesSH | |
| setFstatRecorders(age_t AGE) | TTNeutralGenesSH | |
| setFstatWCRecorders(age_t AGE) | TTNeutralGenesSH | |
| setFstatWeirCockerham(age_t AGE) | TTNeutralGenesSH | |
| setFstatWeirCockerham_MS(age_t AGE) | TTNeutralGenesSH | |
| setFstMatrix(age_t AGE, unsigned char dim) | TTNeutralGenesSH | |
| setFstMatrixRecorders(age_t AGE, unsigned char dim) | TTNeutralGenesSH | |
| setHeteroTable(age_t AGE) | TTNeutralGenesSH | |
| setHeterozygosity(age_t AGE) | TTNeutralGenesSH | |
| setHo(age_idx age_pos) | TTNeutralGenesSH | |
| setHo2(age_idx age_pos) | TTNeutralGenesSH | |
| setHs(age_idx age_pos) | TTNeutralGenesSH | |
| setHs2(age_idx age_pos) | TTNeutralGenesSH | |
| setHt(age_idx age_pos) | TTNeutralGenesSH | |
| setHt2(age_idx age_pos) | TTNeutralGenesSH | |
| setLociDivCounter(age_t AGE) | TTNeutralGenesSH | |
| setNeiGeneticDistance(age_t AGE) | TTNeutralGenesSH | |
| setNeiGeneticDistanceRecorders(age_t AGE, bool pairwise) | TTNeutralGenesSH | |
| setOffsprgCoaBetween() | TTNeutralGenesSH | inline |
| setOffsprgCoaMatrix() | TTNeutralGenesSH | inline |
| setOffsprgCoaWithin() | TTNeutralGenesSH | inline |
| setOffsprgFstat() | TTNeutralGenesSH | inline |
| setOffsprgFstat2() | TTNeutralGenesSH | inline |
| setOffsprgFstBetween() | TTNeutralGenesSH | inline |
| setOffsprgFstMatrix() | TTNeutralGenesSH | inline |
| setOffsprgFstWithin() | TTNeutralGenesSH | inline |
| setOffsprgNeiGeneticDistance() | TTNeutralGenesSH | inline |
| setOffspringAlleleFreq() | TTNeutralGenesSH | inline |
| setOffspringFstatWeirCockerham() | TTNeutralGenesSH | inline |
| setOffspringHeterozygosity() | TTNeutralGenesSH | inline |
| setSibCoa(Individual *I1, Individual *I2) | TTNeutralGenesSH | |
| setSibStats() | TTNeutralGenesSH | |
| setStatRecorders(std::string &token) | TTNeutralGenesSH | virtual |
| STAT_IT typedef | StatHandlerBase | private |
| StatHandler() | StatHandler< SH > | inline |
| StatHandlerBase() | StatHandlerBase | inline |
| Theta_FF | TTNeutralGenesSH | private |
| Theta_FM | TTNeutralGenesSH | private |
| Theta_MM | TTNeutralGenesSH | private |
| TraitStatHandler(TProtoNeutralGenes *trait_proto) | TraitStatHandler< TProtoNeutralGenes, TTNeutralGenesSH > | |
| TTNeutralGenesSH(TProtoNeutralGenes *TP) | TTNeutralGenesSH | inline |
| update() | StatHandlerBase | inlinevirtual |
| ~Handler() | Handler | inlinevirtual |
| ~StatHandler() | StatHandler< SH > | inlinevirtual |
| ~StatHandlerBase() | StatHandlerBase | inlinevirtual |
| ~TraitStatHandler() | TraitStatHandler< TProtoNeutralGenes, TTNeutralGenesSH > | inlinevirtual |
| ~TTNeutralGenesSH() | TTNeutralGenesSH | inlinevirtual |
