| _current_filename | FileHandler | private |
| _current_generation | FileHandler | private |
| _current_replicate | FileHandler | private |
| _ExecRank | FileHandler | private |
| _extension | FileHandler | private |
| _FHLinkedTrait | TraitFileHandler< TProtoQuanti > | protected |
| _FHLinkedTraitIndex | TraitFileHandler< TProtoQuanti > | protected |
| _GenerationOccurrence | FileHandler | private |
| _generations | FileHandler | private |
| _genITER | FileHandler | private |
| _has_genetic_map | TTQuantiFH | private |
| _isGenerationPeriodic | FileHandler | private |
| _isInputHandler | FileHandler | private |
| _isMasterExec | FileHandler | private |
| _isReplicatePeriodic | FileHandler | private |
| _multipleOccurences | FileHandler | private |
| _output_option | TTQuantiFH | private |
| _path | FileHandler | private |
| _pop | FileHandler | protected |
| _ReplicateOccurrence | FileHandler | private |
| _service | FileHandler | private |
| FHread(string &filename) | TTQuantiFH | virtual |
| TraitFileHandler< TProtoQuanti >::FHread(string &filename)=0 | TraitFileHandler< TProtoQuanti > | pure virtual |
| FHwrite() | TTQuantiFH | virtual |
| FileHandler(const char *ext) | FileHandler | inline |
| get_ExecRank() | FileHandler | inline |
| get_extension() | FileHandler | inline |
| get_filename() | FileHandler | |
| get_GenerationOccurrence() | FileHandler | inline |
| get_isGenerationPeriodic() | FileHandler | inline |
| get_isInputHandler() | FileHandler | inline |
| get_isMasterExec() | FileHandler | inline |
| get_isReplicatePeriodic() | FileHandler | inline |
| get_OccMatrix() | FileHandler | inline |
| get_path() | FileHandler | inline |
| get_pop_ptr() | FileHandler | inline |
| get_ReplicateOccurrence() | FileHandler | inline |
| get_service() | FileHandler | inline |
| ifExist() | FileHandler | virtual |
| init() | FileHandler | virtual |
| print(ofstream &FH, Patch *patch, sex_t SEX, age_idx Ax, unsigned int print_gene, bool print_genotype, bool print_additive_genotype) | TTQuantiFH | |
| print_PLINK_FAM(ofstream &FH, age_idx Ax, Patch *patch) | TTQuantiFH | |
| print_PLINK_PED(ofstream &FH, age_idx Ax, Patch *patch) | TTQuantiFH | |
| set(bool rpl_per, bool gen_per, int rpl_occ, int gen_occ, int rank, string path, TProtoQuanti *trait_proto) | TraitFileHandler< TProtoQuanti > | virtual |
| FileHandler::set(bool rpl_per, bool gen_per, int rpl_occ, int gen_occ, int rank, string path) | FileHandler | inlinevirtual |
| set_ExecRank(int val) | FileHandler | inline |
| set_extension(const char *ext) | FileHandler | inline |
| set_GenerationOccurrence(unsigned int val) | FileHandler | inline |
| set_isGenerationPeriodic(bool val) | FileHandler | inline |
| set_isInputHandler(bool val) | FileHandler | inline |
| set_isMasterExec(bool is) | FileHandler | inline |
| set_isReplicatePeriodic(bool val) | FileHandler | inline |
| set_multi(bool rpl_per, bool gen_per, int rpl_occ, TMatrix *Occ, string path, TProtoQuanti *trait_proto) | TraitFileHandler< TProtoQuanti > | virtual |
| FileHandler::set_multi(bool rpl_per, bool gen_per, int rpl_occ, TMatrix *Occ, string path) | FileHandler | inlinevirtual |
| set_OccMatrix(TMatrix *occ) | FileHandler | inline |
| set_path() | FileHandler | |
| set_pop_ptr(Metapop *pop_ptr) | FileHandler | inline |
| set_ReplicateOccurrence(unsigned int val) | FileHandler | inline |
| set_service(FileServices *srv) | FileHandler | inline |
| setOutputOption(string opt) | TTQuantiFH | |
| TraitFileHandler(TProtoQuanti *trait_proto, const char *ext) | TraitFileHandler< TProtoQuanti > | |
| TTQuantiFH(TProtoQuanti *T) | TTQuantiFH | inline |
| update() | FileHandler | virtual |
| write_PLINK() | TTQuantiFH | |
| write_TABLE() | TTQuantiFH | |
| ~FileHandler() | FileHandler | inlinevirtual |
| ~Handler() | Handler | inlinevirtual |
| ~TraitFileHandler() | TraitFileHandler< TProtoQuanti > | inlinevirtual |
| ~TTQuantiFH() | TTQuantiFH | inlinevirtual |
