SIMenv Class Reference

Global class exposing the current SimRunner throughout the code. More...

#include <simenv.h>

Collaboration diagram for SIMenv:

Static Public Member Functions
static void	loadDefaultComponents (SimBuilder *sim)
static SimRunner *	setMainSim (Metapop *pop)
static SimRunner *	getNewSimulation ()
static void	setMainSim (SimRunner *sim)
static unsigned int	getCurrentGeneration ()
static unsigned int	getGenerations ()
static unsigned int	getCurrentReplicate ()
static unsigned int	getReplicates ()
static int	getCurrentRankInLifeCycle ()

Static Public Attributes
static SimRunner *	MainSim = NULL

Private Member Functions
	SIMenv ()

Detailed Description

Global class exposing the current SimRunner throughout the code.

Constructor & Destructor Documentation

SIMenv()

SIMenv::SIMenv ( )

inlineprivate

{}

Member Function Documentation

getCurrentGeneration()

static unsigned int SIMenv::getCurrentGeneration ( )

inlinestatic

{return MainSim->getCurrentGeneration();}

References SimRunner::getCurrentGeneration(), and MainSim.

Referenced by StatServices::notify().

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getCurrentRankInLifeCycle()

static int SIMenv::getCurrentRankInLifeCycle ( )

inlinestatic

{return MainSim->getCurrentRankInLifeCycle();}

References SimRunner::getCurrentRankInLifeCycle(), and MainSim.

Referenced by BinaryDataSaver::FHwrite().

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getCurrentReplicate()

static unsigned int SIMenv::getCurrentReplicate ( )

inlinestatic

{return MainSim->getCurrentReplicate();}

References SimRunner::getCurrentReplicate(), and MainSim.

Referenced by LCE_StatFH::FHwrite(), StatServices::printStatValue(), and StatServices::recordStats().

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getGenerations()

static unsigned int SIMenv::getGenerations ( )

inlinestatic

{return MainSim->getGenerations();}

References SimRunner::getGenerations(), and MainSim.

Referenced by LCE_Breed_Wolbachia::execute(), StatHandlerBase::init(), LCE_Breed_Wolbachia::loadFileServices(), StatServices::setOccurrences(), and LCE_StatServiceNotifier::setParameters().

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getNewSimulation()

static SimRunner* SIMenv::getNewSimulation ( )

inlinestatic

                                         {
    SimRunner *sim = new SimRunner( new Metapop() );
    loadDefaultComponents( sim );
    return sim;
  }

References loadDefaultComponents().

getReplicates()

static unsigned int SIMenv::getReplicates ( )

inlinestatic

{return MainSim->getReplicates();}

References SimRunner::getReplicates(), and MainSim.

Referenced by LCE_StatFH::FHwrite(), StatHandlerBase::init(), StatServices::init(), LCE_Breed_Wolbachia::loadFileServices(), and StatServices::printStatAverage().

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loadDefaultComponents()

void SIMenv::loadDefaultComponents ( SimBuilder *  sim )

static

{
  //add TraitPrototype
  sim->add_trait(new TProtoDispersal(FEM));
  sim->add_trait(new TProtoDispersal(MAL));
  sim->add_trait(new TProtoNeutralGenes());
  sim->add_trait(new TProtoDeletMutations_bitstring());
  sim->add_trait(new TProtoWolbachia());
  sim->add_trait(new TProtoQuanti());
  sim->add_trait(new TProtoBDMI());
  
  //add LifeCycleEvents  
  sim->add_LCE(new BinaryDataSaver());
  sim->add_LCE(new LCE_StatServiceNotifier());
  sim->add_LCE(new LCE_FileServicesNotifier());
  sim->add_LCE(new LCE_Regulation());
  sim->add_LCE(new LCE_Aging());
  sim->add_LCE(new LCE_Patch_Extinction());
  sim->add_LCE(new LCE_Breed());
  sim->add_LCE(new LCE_Breed_Selection());
  sim->add_LCE(new LCE_Breed_Disperse());
  sim->add_LCE(new LCE_Breed_Selection_Disperse());
  sim->add_LCE(new LCE_Breed_Wolbachia());
  sim->add_LCE(new LCE_Breed_Quanti());
  sim->add_LCE(new LCE_Disperse_ConstDisp());
  sim->add_LCE(new LCE_SeedDisp());
  sim->add_LCE(new LCE_Disperse_EvolDisp());
  sim->add_LCE(new LCE_Selection_base());
  sim->add_LCE(new LCE_Cross());
  sim->add_LCE(new LCE_Resize());
  sim->add_LCE(new LCE_QuantiInit());
  sim->add_LCE(new LCE_QuantiModifier());
  sim->add_LCE(new LCE_PhenotypeExpression());
  sim->add_LCE(new LCE_NtrlInit());
  sim->add_LCE(new LCE_Init_BDMI());
  sim->build_allParams();
  
}

References ComponentManager::add_LCE(), ComponentManager::add_trait(), ParamManager::build_allParams(), FEM, and MAL.

Referenced by getNewSimulation(), and setMainSim().

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setMainSim() [1/2]

static SimRunner* SIMenv::setMainSim ( Metapop *  pop )

inlinestatic

                                                {
    MainSim = new SimRunner( pop );
    loadDefaultComponents( MainSim );
    return MainSim;
  }

References loadDefaultComponents(), and MainSim.

Referenced by main().

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setMainSim() [2/2]

static void SIMenv::setMainSim ( SimRunner *  sim )

inlinestatic

{MainSim = sim;}

References MainSim.

Member Data Documentation

MainSim

SimRunner * SIMenv::MainSim = NULL

static

Referenced by LCE_PhenotypeExpression::execute(), GenotyperFH::FHwrite(), getCurrentGeneration(), getCurrentRankInLifeCycle(), getCurrentReplicate(), getGenerations(), getReplicates(), LCE_StatServiceNotifier::LCE_StatServiceNotifier(), TProtoNeutralGenes::loadFileServices(), TProtoQuanti::loadFileServices(), Metapop::loadPopFromBinarySource(), Metapop::loadPopFromTraitFile(), GenotyperFH::prepare_data_table(), GenotyperFH::print_PLINK(), LCE_Selection_base::set_std_rate_of_change(), setMainSim(), LCE_Breed_base::setMatingSystem(), and Metapop::setPopulation().

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The documentation for this class was generated from the following files:

• simenv.h
• simenv.cc