Nemo
2.3.56
Simulate forward-in-time genetic evolution in a spatially explicit, individual-based stochastic simulator
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File Handler used to save the simulation parameters to a log file. More...
#include <filehandler.h>
Public Member Functions | |
FHLogWriter () | |
virtual | ~FHLogWriter () |
virtual void | FHwrite () |
virtual void | FHread (string &filename) |
void | createInitFile (list< ParamSet * > ¶ms) |
void | save_simparams (list< ParamSet * > ¶ms) |
void | log_message (string &logstr) |
void | open_logfile4writing (ofstream &FH, ios_base::openmode flag=ios_base::out) |
Public Member Functions inherited from FileHandler | |
FileHandler (const char *ext) | |
virtual | ~FileHandler () |
virtual void | init () |
Called by notifier during simulation setup, performs file checking. More... | |
virtual vector< string > | ifExist () |
Checks if any file associated with the current file name already exists on disk. More... | |
virtual void | set (bool rpl_per, bool gen_per, int rpl_occ, int gen_occ, int rank, string path) |
Sets the hanlder parameters. More... | |
virtual void | set_multi (bool rpl_per, bool gen_per, int rpl_occ, TMatrix *Occ, string path) |
virtual void | FHwrite ()=0 |
Default behavior of the class, called by Handler::update(). More... | |
virtual void | FHread (string &filename)=0 |
Default input function. More... | |
virtual void | update () |
Updates the inner replicate and generation counters and calls FHwrite if needed by the the periodicity of the file. More... | |
Metapop * | get_pop_ptr () |
Returns the pointer to the current metapop through the FileServices interface. More... | |
void | set_pop_ptr (Metapop *pop_ptr) |
FileServices * | get_service () |
Returns pointer to the FileServices. More... | |
void | set_service (FileServices *srv) |
std::string & | get_path () |
void | set_path () |
std::string & | get_extension () |
void | set_extension (const char *ext) |
std::string & | get_filename () |
Builds and returns the current file name depending on the periodicity of the file. More... | |
bool | get_isInputHandler () |
void | set_isInputHandler (bool val) |
bool | get_isReplicatePeriodic () |
void | set_isReplicatePeriodic (bool val) |
unsigned int | get_ReplicateOccurrence () |
void | set_ReplicateOccurrence (unsigned int val) |
bool | get_isGenerationPeriodic () |
void | set_isGenerationPeriodic (bool val) |
unsigned int | get_GenerationOccurrence () |
void | set_GenerationOccurrence (unsigned int val) |
unsigned int | get_ExecRank () |
unused yet... More... | |
void | set_ExecRank (int val) |
TMatrix * | get_OccMatrix () |
void | set_OccMatrix (TMatrix *occ) |
bool | get_isMasterExec () |
void | set_isMasterExec (bool is) |
Public Member Functions inherited from Handler | |
virtual void | init ()=0 |
Inits state. More... | |
virtual void | update ()=0 |
Updates the handler state. More... | |
virtual | ~Handler () |
Additional Inherited Members | |
Protected Attributes inherited from FileHandler | |
Metapop * | _pop |
Pointer to the current metapop, set during initialization within the init function. More... | |
File Handler used to save the simulation parameters to a log file.
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inline |
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inlinevirtual |
void FHLogWriter::createInitFile | ( | list< ParamSet * > & | params | ) |
References FileHandler::get_service(), FileServices::getBaseFileName(), MAIN_VERSION, MINOR_VERSION, RELEASE, REVISION, and VERSION_DATE.
Referenced by FileServices::log_simparams().
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inlinevirtual |
Implements FileHandler.
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inlinevirtual |
Implements FileHandler.
void FHLogWriter::log_message | ( | string & | logstr | ) |
References open_logfile4writing().
Referenced by FileServices::log().
void FHLogWriter::open_logfile4writing | ( | ofstream & | FH, |
ios_base::openmode | flag = ios_base::out |
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References error(), and FileHandler::get_filename().
Referenced by log_message(), and save_simparams().
void FHLogWriter::save_simparams | ( | list< ParamSet * > & | params | ) |
References MAIN_VERSION, MINOR_VERSION, open_logfile4writing(), RELEASE, REVISION, and VERSION_DATE.
Referenced by FileServices::log_simparams().