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Nemo
2.4.0b
Simulate forward-in-time genetic evolution in a spatially explicit, individual-based stochastic simulator
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File Handler used to save the simulation parameters to a log file. More...
#include <filehandler.h>
Inheritance diagram for FHLogWriter:
Collaboration diagram for FHLogWriter:Public Member Functions | |
| FHLogWriter () | |
| virtual | ~FHLogWriter () |
| virtual void | FHwrite () |
| virtual void | FHread (string &filename) |
| void | createInitFile (list< ParamSet * > ¶ms) |
| void | save_simparams (list< ParamSet * > ¶ms) |
| void | log_message (string &logstr) |
| void | open_logfile4writing (ofstream &FH, ios_base::openmode flag=ios_base::out) |
Public Member Functions inherited from FileHandler | |
| FileHandler (const char *ext) | |
| virtual | ~FileHandler () |
| virtual void | init () |
| Called by notifier during simulation setup, performs file checking. More... | |
| virtual vector< string > | ifExist () |
| Checks if any file associated with the current file name already exists on disk. More... | |
| virtual void | set (bool rpl_per, bool gen_per, int rpl_occ, int gen_occ, int rank, string path) |
| Sets the hanlder parameters. More... | |
| virtual void | set_multi (bool rpl_per, bool gen_per, int rpl_occ, TMatrix *Occ, string path) |
| virtual void | update () |
| Updates the inner replicate and generation counters and calls FHwrite if needed by the the periodicity of the file. More... | |
| Metapop * | get_pop_ptr () |
| Returns the pointer to the current metapop through the FileServices interface. More... | |
| void | set_pop_ptr (Metapop *pop_ptr) |
| FileServices * | get_service () |
| Returns pointer to the FileServices. More... | |
| void | set_service (FileServices *srv) |
| std::string & | get_path () |
| void | set_path () |
| std::string & | get_extension () |
| void | set_extension (const char *ext) |
| std::string & | get_filename () |
| Builds and returns the current file name depending on the periodicity of the file. More... | |
| bool | get_isInputHandler () |
| void | set_isInputHandler (bool val) |
| bool | get_isReplicatePeriodic () |
| void | set_isReplicatePeriodic (bool val) |
| unsigned int | get_ReplicateOccurrence () |
| void | set_ReplicateOccurrence (unsigned int val) |
| bool | get_isGenerationPeriodic () |
| void | set_isGenerationPeriodic (bool val) |
| unsigned int | get_GenerationOccurrence () |
| void | set_GenerationOccurrence (unsigned int val) |
| unsigned int | get_ExecRank () |
| unused yet... More... | |
| void | set_ExecRank (int val) |
| TMatrix * | get_OccMatrix () |
| void | set_OccMatrix (TMatrix *occ) |
| bool | get_isMasterExec () |
| void | set_isMasterExec (bool is) |
Public Member Functions inherited from Handler | |
| virtual | ~Handler () |
Additional Inherited Members | |
Protected Attributes inherited from FileHandler | |
| Metapop * | _pop |
| Pointer to the current metapop, set during initialization within the init function. More... | |
File Handler used to save the simulation parameters to a log file.
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inline |
| void FHLogWriter::createInitFile | ( | list< ParamSet * > & | params | ) |
References MAIN_VERSION, MINOR_VERSION, RELEASE, REVISION, and VERSION_DATE.
Referenced by FileServices::log_simparams().
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inlinevirtual |
Implements FileHandler.
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inlinevirtual |
Implements FileHandler.
| void FHLogWriter::log_message | ( | string & | logstr | ) |
Referenced by FileServices::log().
| void FHLogWriter::open_logfile4writing | ( | ofstream & | FH, |
| ios_base::openmode | flag = ios_base::out |
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| ) |
References error().
| void FHLogWriter::save_simparams | ( | list< ParamSet * > & | params | ) |
References MAIN_VERSION, MINOR_VERSION, RELEASE, REVISION, and VERSION_DATE.
Referenced by FileServices::log_simparams().
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