#include <iostream>
#include <string>
#include <stdarg.h>
#include <stdio.h>
#include "output.h"
#include "MPImanager.h"

Functions
void	message (const char *message,...)

void	warning (const char *str,...)

int	error (const char *str,...)

void	fatal (const char *str,...)

void	abort ()

Variables
bool	SILENT_RUN = false

Detailed Description

Id: output.cc,v 1.10 2015-07-13 08:52:58 fred Exp

Nemo2

This file is part of Nemo

Nemo is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

Nemo is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA

created on

Date: 08.09.05

Author: fred

Function Documentation

◆ abort()

void abort ( )

{
  std::cerr<<"***ERROR*** Aborting the simulation.\n";
 
  MPIenv::abort(1);
}

References MPIenv::abort().

Referenced by LCE_Breed_Selection_Disperse::breed_selection_disperse().

Here is the caller graph for this function:

◆ error()

int error	(	const char *	str,
			...
	)

{
  va_list(ap);
  
  std::cerr<<"***ERROR*** ";
 
  va_start(ap, str);
 
#ifdef _R_OUTPUT_
  REvprintf(str, ap);
#else
  vfprintf(stderr,str, ap);
#endif
 
  va_end(ap);
  
  return 0;
}

◆ fatal()

void fatal	(	const char *	str,
			...
	)

{
  va_list(ap);
  
  std::cerr<<"***ERROR*** ";
 
  va_start(ap, str);
 
#ifdef _R_OUTPUT_
  REvprintf(str, ap);
#else
  vfprintf(stderr,str,ap);
#endif
 
  va_end(ap);
 
  MPIenv::abort(1);
}

References MPIenv::abort().

Referenced by tstring::__get_block(), GeneticMap::addTrait(), Individual::addTrait(), ParamManager::build_records(), ParamsParser::callMacro(), Individual::create(), Individual::createTrait(), ParamsParser::diag_matrix(), LCE_Breed_Disperse::execute(), LCE_Breed_Selection_Disperse::execute(), LCE_Disperse_ConstDisp::execute(), LCE_Resize::execute(), BinaryStorageBuffer::extend_buff(), BinaryDataLoader::extractOffsetTable(), BinaryDataLoader::extractPop(), FHPedigreeReader::FHread(), TTDeletMutBitstrFH::FHread(), TTNeutralGenesFH::FHread(), TTQuantiFH::FHread(), LCE_SelectionFH::FHwrite(), MPFileHandler::FHwrite(), LCE_StatFH::FHwrite(), TTBDMI_FH::FHwrite(), TTDeletMutBitstrFH::FHwrite(), TTQuantiFH::FHwrite(), TTQFreqExtractor::FHwrite(), TTWolbachiaFH::FHwrite(), TMatrix::get(), ParamSet::get_param(), Param::getArgumentFromFile(), tstring::getBlock(), ParamsParser::getMacroArgs(), ParamsParser::getMacroParamValue(), ParamsParser::getMacroSepParamChar(), ParamsParser::getParameters(), Metapop::getPatchPtr(), FileServices::getSampledPop(), TTQuantiSH::getSNPalleleFreqInPatch(), Individual::getTrait(), StatHandlerBase::init(), TT_BDMI::init(), TTDeletMutations_bitstring::init(), TTNeutralGenes::init(), FileServices::init(), LifeCycleEvent::init(), TTDispersal::init_sequence(), LCE_Selection_base::loadFileServices(), Metapop::loadFileServices(), LCE_FileServicesNotifier::loadFileServices(), TProtoNeutralGenes::loadFileServices(), TProtoQuanti::loadFileServices(), Metapop::loadPopFromBinarySource(), Metapop::loadPopFromTraitFile(), Metapop::loadSourcePopulation(), main(), LCE_Breed_Selection::makeOffspringWithSelection(), IndFactory::makePrototype(), ParamsParser::matrix(), nChooseK(), Individual::operator=(), Param::parse_matrix(), ParamsParser::parseMacroFunctionBlock(), BinaryDataSaver::printData(), BinaryDataSaver::printHeader(), BinaryDataSaver::printOffsetTable(), LCE_StatFH::PrintStat_byGen(), ParamsParser::rbernoul(), FileParser::read(), BinaryFileParser::read(), BinaryStorageBuffer::read(), StreamParser::readArguments(), StreamParser::readUntilCharacter(), LCE_Resize::removeDesignatedPatch(), ParamsParser::rep(), ParamsParser::rexp(), ParamsParser::rgamma(), ParamsParser::rlognorm(), ParamsParser::rnorm(), ParamsParser::rpoiss(), SimRunner::run(), ParamsParser::runif(), ParamsParser::seq(), BinaryStorageBuffer::set_buff(), ParamManager::set_parameters(), ParamManager::setArgString(), LCE_SelectionSH::setDataTable(), TTQuantiSH::setDataTables(), BinaryDataSaver::setFileDescriptor(), ParamManager::setFilename(), TTDeletMutBitstrSH::setLethalEquivalents(), GeneticMap::setLookupTable(), LCE_Breed_base::setMatingSystem(), LCE_StatServiceNotifier::setOccurence(), StatServices::setOccurrences(), TTQuantiFH::setOutputOption(), LCE_QuantiInit::setParameters(), LCE_QuantiModifier::setParameters(), TProtoQuanti::setParameters(), TTQuantiSH::setStats(), StatRecorder< S >::setVal(), ParamManager::stripFormatString(), FileServices::subSamplePatch(), ParamsParser::sym_matrix(), ParamsParser::tempseq(), GeneticMap::unregisterTrait(), LCE_Resize::updatePatchCapacities(), TTNeutralGenesFH::write_Fst_i(), TTNeutralGenesFH::write_FSTAT(), TTNeutralGenesFH::write_GENEPOP(), TTNeutralGenesFH::write_PLINK(), TTQuantiFH::write_PLINK(), TTNeutralGenesFH::write_TAB(), TTQuantiFH::write_TABLE(), and TTNeutralGenesFH::write_varcompWC().

◆ message()

void message	(	const char *	message,
			...
	)

{
  
  if(SILENT_RUN) return;
  
  va_list(ap);
  
  va_start(ap, message);
 
#ifdef _R_OUTPUT_
  Rvprintf(message, ap);
#else
  vprintf(message,ap);
#endif
 
  va_end(ap);
}

References message(), and SILENT_RUN.

Referenced by SimBuilder::build_currentParams(), ParamsParser::callMacro(), ParamSet::check_consistency(), Metapop::clear(), IndFactory::clearPrototype(), SimRunner::Cycle(), LCE_Breed::execute(), LCE_Breed_Disperse::execute(), LCE_Breed_Selection::execute(), LCE_Breed_Selection_Disperse::execute(), LCE_Disperse_ConstDisp::execute(), LCE_Disperse_EvolDisp::execute(), LCE_Regulation::execute(), LCE_Aging::execute(), LCE_Patch_Extinction::execute(), LCE_Cross::execute(), LCE_Resize::execute(), LCE_Breed_Quanti::execute(), LCE_Selection_base::execute(), LCE_ParamUpdaterNotifier::execute(), LCE_FileServicesNotifier::execute(), LCE_StatServiceNotifier::execute(), LCE_Breed_Wolbachia::execute(), BinaryDataLoader::extractOffsetTable(), BinaryDataLoader::extractPop(), FHPedigreeReader::FHread(), LCE_StatFH::FHwrite(), TTDeletMutBitstrFH::FHwrite(), FileServices::getSampledPop(), TTQuantiSH::getVaNoDominance(), TTQuantiSH::getVaWithDominance(), FileServices::init(), SimRunner::init_components(), SimRunner::init_random_seed(), Metapop::loadPopFromBinarySource(), Metapop::loadSourcePopulation(), FileServices::log(), IndFactory::makePrototype(), message(), LCE_Breed_base::NonWrightFisherPopulation(), LCE_Breed_Quanti::NonWrightFisherPopulation(), StatServices::notify(), ParamsParser::parse(), BinaryDataSaver::printHeader(), BinaryDataSaver::printOffsetTable(), FileParser::read(), StreamParser::read(), SimRunner::Replicate_LOOP(), SimRunner::reset(), SimRunner::reset_services(), Metapop::retrieve_data(), SimRunner::run(), SimRunner::runPostExec(), SimRunner::runPostExecReplicateWise(), TProtoQuanti::set_mutation_matrix_decomposition(), ParamManager::set_parameters(), TProtoQuanti::setContinuousMutationModel(), LCE_Disperse_base::setLatticeMatrix(), TProtoBDMI::setParameters(), Metapop::setPopulation(), Metapop::setPopulationFromSourceInPreserveMode(), LCE_Disperse_base::setReducedDispMatrix(), MPStatHandler::setStatRecorders(), TTBDMI_SH::setStatRecorders(), TTDeletMutBitstrSH::setStatRecorders(), TTDispersalSH::setStatRecorders(), TTNeutralGenesSH::setStatRecorders(), TTQuantiSH::setStatRecorders(), LCE_Disperse_base::setSteppingStone1DMatrix(), StatRecorder< S >::setVal(), DataTable< T >::show_up(), Individual::show_up(), Metapop::show_up(), Patch::show_up(), Param::show_up(), ParamSet::show_up(), TMatrix::show_up(), TTDispersal::show_up(), TTNeutralGenes::show_up(), TTQuanti::show_up(), START_MESSAGE(), Metapop::store_data(), BinaryDataSaver::storeData(), LCE_Breed_base::WrightFisherPopulation(), LCE_Breed_Quanti::WrightFisherPopulation(), TTNeutralGenesFH::write_Fst_i(), TTNeutralGenesFH::write_FSTAT(), TTNeutralGenesFH::write_GENEPOP(), TTNeutralGenesFH::write_PLINK(), TTQuantiFH::write_PLINK(), TTNeutralGenesFH::write_TAB(), TTQuantiFH::write_TABLE(), TTNeutralGenesFH::write_varcompWC(), Metapop::~Metapop(), SimBuilder::~SimBuilder(), and SimRunner::~SimRunner().

◆ warning()

void warning	(	const char *	str,
			...
	)

{
  if(SILENT_RUN) return;
  
  va_list(ap);
  
  std::cout<<"\n>>>> WARNING::";
   
  va_start(ap, str);
 
#ifdef _R_OUTPUT_
  Rvprintf(str, ap);
#else
  vprintf(str,ap);
#endif
 
  va_end(ap);
}