Here is a list of all class members with links to the classes they belong to:

- s -

• Sample() : RAND
• sampleAmongPop() : LCE_Cross
• SampleSeq() : RAND
• SampleSeqWithReciprocal() : RAND
• sampleWithinPop() : LCE_Cross
• save_simparams() : FHLogWriter
• ScrambleArrayUInt() : RAND
• ScrambleContainer() : LCE_BreedAssortativeMating
• Seed1 : RAND
• Seed2 : RAND
• seq() : ParamsParser
• sequence : TTDeletMutations_bitstring
• Service() : Service
• set() : bitstring , DataTable< T > , EventFileHandler< LCE > , FileHandler , Param , Patch , StatRecBase , StatRecorder< S > , StatServices , TMatrix , TraitFileHandler< TP >
• set_age() : Patch
• set_allele() : TTNeutralGenes , TTQuanti_continuous , TTQuanti_diallelic
• set_allele_bit() : TTQuanti , TTQuanti_continuous , TTQuanti_diallelic , TTQuanti_diallelic_bitstring
• set_allele_value() : TT_BDMI , TTDeletMutations_bitstring , TTDispersal , TTNeutralGenes , TTQuanti_continuous , TTQuanti_diallelic , TTQuanti_diallelic_bitstring , TTrait , TTWolbachia
• set_bit_sequence() : TTQuanti_diallelic_bitstring
• set_buff() : BinaryStorageBuffer
• set_col() : TMatrix
• set_data() : bitstring
• set_effect() : TProtoDeletMutations_bitstring
• set_effects() : TProtoDeletMutations_bitstring , TTDeletMutations_bitstring
• set_effects_exp() : TProtoDeletMutations_bitstring
• set_effects_gamma() : TProtoDeletMutations_bitstring
• set_effects_lognorm() : TProtoDeletMutations_bitstring
• set_env_cue() : LCE_PhenotypeExpression
• set_eVarianceSD() : TProtoQuanti
• set_event_name() : LifeCycleEvent
• set_ExecRank() : FileHandler
• set_extension() : FileHandler
• set_fit_model() : LCE_Selection_base
• set_g_value_matrix() : LCE_PhenotypeExpression
• set_gender() : TTDispersal
• set_GenerationOccurrence() : FileHandler
• set_genotype_value_additive() : TProtoQuanti
• set_genotype_value_dominance() : TProtoQuanti
• set_gsl_mutation_matrix() : TProtoQuanti
• set_gsl_mutation_matrix_from_sigma() : TProtoQuanti
• set_index() : TraitPrototype
• set_inherit_func_ptr() : TTDeletMutations_bitstring , TTNeutralGenes
• set_init_freq() : TProtoBDMI
• set_init_rate_fem() : TTDispersal
• set_init_rate_mal() : TTDispersal
• set_init_values() : TProtoQuanti
• set_isExtinct() : Patch
• set_isForward() : LCE_Disperse_base
• set_isGenerationPeriodic() : FileHandler
• set_isInputHandler() : FileHandler
• set_isMasterExec() : FileHandler
• set_isReplicatePeriodic() : FileHandler
• set_K() : Patch
• set_KFem() : Patch
• set_KMal() : Patch
• set_local_optima() : LCE_Selection_base
• set_matrix_param() : LCE_Patch_Extinction
• set_multi() : FileHandler , TraitFileHandler< TP >
• set_mut_func_ptr() : TTNeutralGenes
• set_mut_mean() : TTDispersal
• set_mut_rate() : TTDeletMutations_bitstring , TTDispersal
• set_mutation_func_ptr() : TTDeletMutations_bitstring
• set_mutation_matrix_decomposition() : TProtoQuanti
• set_nb_hmz_mutations() : TTDeletMutations_bitstring
• set_nb_htz_mutations() : TTDeletMutations_bitstring
• set_nb_locus() : TTDeletMutations_bitstring
• set_nb_mutations() : TTDeletMutations_bitstring
• set_OccMatrix() : FileHandler
• set_param() : ParamSet
• set_param_rate_of_change() : LCE_Selection_base
• set_parameters() : ParamManager
• set_paramset() : LifeCycleEvent , SimComponent
• set_paramsetFromCopy() : SimComponent
• set_path() : FileHandler
• set_phenot_g1_evol() : LCE_PhenotypeExpression
• set_phenot_g1_g2_evol() : LCE_PhenotypeExpression
• set_phenot_g2_evol() : LCE_PhenotypeExpression
• set_phenot_no_evol() : LCE_PhenotypeExpression
• set_phenotype() : TTQuanti
• set_pop_ptr() : FileHandler , FileServices , LifeCycleEvent , StatServices
• set_proto() : TT_BDMI , TTDeletMutations_bitstring , TTDispersal , TTNeutralGenes , TTQuanti
• set_recomb_template() : TTDeletMutations_bitstring
• set_ReplicateOccurrence() : FileHandler
• set_row() : TMatrix
• set_sampling_params() : FileServices
• set_sel_model() : LCE_Selection_base
• set_sequence() : TT_BDMI , TTDeletMutations_bitstring , TTDispersal , TTNeutralGenes , TTQuanti_continuous , TTQuanti_diallelic , TTQuanti_diallelic_bitstring , TTrait , TTWolbachia
• set_service() : FileHandler , StatHandlerBase
• set_statService() : LCE_StatFH
• set_std_rate_of_change() : LCE_Selection_base
• set_trait() : TT_BDMI , TTDeletMutations_bitstring , TTDispersal , TTNeutralGenes , TTQuanti , TTrait , TTWolbachia
• set_trait_value_func_ptr() : TProtoQuanti
• set_trait_value_noVE() : TProtoQuanti
• set_trait_value_VE() : TProtoQuanti
• set_transmit_rate() : TTWolbachia
• set_value() : TT_BDMI , TTDeletMutations_bitstring , TTDispersal , TTNeutralGenes , TTQuanti , TTrait , TTWolbachia
• set_viability_func_ptr() : TTDeletMutations_bitstring
• set_write_fct() : TTNeutralGenesFH
• setAdltNeiGeneticDistance() : TTNeutralGenesSH
• setAdultAlleleFreq() : TTNeutralGenesSH
• setAdultDeletStats() : TTDeletMutBitstrSH
• setAdultHeterozygosity() : TTNeutralGenesSH
• setAdults_Theta() : TTNeutralGenesSH
• setAdultsCoaBetween() : TTNeutralGenesSH
• setAdultsCoaMatrix() : TTNeutralGenesSH
• setAdultsCoaWithin() : TTNeutralGenesSH
• setAdultsFstat() : TTNeutralGenesSH
• setAdultsFstat2() : TTNeutralGenesSH
• setAdultsFstatWeirCockerham() : TTNeutralGenesSH
• setAdultsFstBetween() : TTNeutralGenesSH
• setAdultsFstMatrix() : TTNeutralGenesSH
• setAdultsFstWithin() : TTNeutralGenesSH
• setAdultStats() : TTBDMI_SH , TTQuantiSH
• setAdultTable() : LCE_SelectionSH
• setAdultViab() : TTDeletMutBitstrSH
• setAge() : Individual
• setAlleleModel() : TProtoQuanti
• setAlleleTables() : TTNeutralGenesSH
• setArg() : Param
• setArgString() : ParamManager
• setAtGeneration() : Param
• setBasename() : FileServices
• setBaseParameters() : LCE_Disperse_base
• setBasicLatticeMatrix() : LCE_Disperse_base
• setBounds() : Param
• setCoaMatrix() : TTNeutralGenesSH
• setCoaMatrixRecorders() : TTNeutralGenesSH
• setCompactOutputFormat() : StatServices
• setContinuousMutationModel_full_pleio() : TProtoQuanti
• setContinuousMutationModel_no_pleio() : TProtoQuanti
• setContinuousMutationModel_var_pleio() : TProtoQuanti
• setCurrentAge() : Metapop
• setCurrentGeneration() : Metapop , SimRunner
• setCurrentID() : Individual
• setCurrentReplicate() : Metapop , SimRunner
• setDataTable() : LCE_SelectionSH
• setDataTables() : TTQuantiSH
• setDefaultOutputFormat() : StatServices
• setDeletStats() : TTDeletMutBitstrSH
• setDiallelicMutationModel() : TProtoQuanti
• setDispMatrix() : LCE_Disperse_base
• setDominanceParameters() : TProtoQuanti
• setDxyRecorders() : TTNeutralGenesSH
• setEffectsFromInput() : TProtoDeletMutations_bitstring
• setElapsedTime() : SimRunner
• setEpistasisParameters() : TProtoQuanti
• setFather() : Individual
• setFatherID() : Individual
• setFecundity() : Individual , LCE_Breed_base
• setFieldPrecision() : StatServices
• setFieldSeparator() : StatServices
• setFieldWidth() : StatServices
• setFileDescriptor() : BinaryDataSaver
• setFilename() : ParamManager
• setForFirstGeneration() : SimRunner
• setFormat() : GenotyperFH
• setFreqRecorders() : TTNeutralGenesSH
• setFreqRecordersPerPatch() : TTNeutralGenesSH
• setFst() : TTDeletMutBitstrSH
• setFst_li() : TTNeutralGenesSH
• setFstat() : TTNeutralGenesSH
• setFstat2() : TTNeutralGenesSH
• setFstat2Recorders() : TTNeutralGenesSH
• setFstatRecorders() : TTNeutralGenesSH
• setFstatWCRecorders() : TTNeutralGenesSH
• setFstatWeirCockerham() : TTNeutralGenesSH
• setFstatWeirCockerham_MS() : TTNeutralGenesSH
• setFstMatrix() : TTNeutralGenesSH
• setFstMatrixRecorders() : TTNeutralGenesSH
• setFuncPtr() : ParamUpdater< SC >
• setGeneration() : BinaryDataLoader
• setGenerations() : Metapop , SimRunner
• setGeneticMapParameters() : TTProtoWithMap
• setGeneticMapParams() : TProtoQuanti
• setGenoFitnessValue() : TProtoBDMI
• setHandler() : StatRecorder< S >
• setHeritabilityParams() : TProtoQuanti
• setHeteroTable() : TTNeutralGenesSH
• setHeterozygosity() : TTNeutralGenesSH
• setHo() : TTNeutralGenesSH
• setHo2() : TTNeutralGenesSH
• setHome() : Individual
• setHs() : TTNeutralGenesSH
• setHs2() : TTNeutralGenesSH
• setHt() : TTNeutralGenesSH
• setHt2() : TTNeutralGenesSH
• setID() : Individual , Patch
• setIndentityDispMatrix() : LCE_Disperse_base
• setIndPhenotype() : LCE_Breed_Quanti , LCE_PhenotypeExpression , LCE_QuantiModifier
• setInfectionStats() : TTWolbachiaSH
• setInitialValuesParams() : TProtoQuanti
• setIsBounded() : Param
• setIsland_MigrantPool_Matrix() : LCE_Disperse_base
• setIsland_PropagulePool_Matrix() : LCE_Disperse_base
• setIsRequired() : Param , ParamSet
• setIsSelfed() : Individual
• setIsSet() : Param
• setKinClassCounter() : MPStatHandler
• setKinship() : MPStatHandler
• setLatticeAbsorbingMatrix() : LCE_Disperse_base
• setLatticeMatrix() : LCE_Disperse_base
• setLatticeReflectingMatrix() : LCE_Disperse_base
• setLatticeTorrusMatrix() : LCE_Disperse_base
• setLethalEquivalents() : TTDeletMutBitstrSH
• setLifeCycle() : SimRunner
• setLocalOptima() : LCE_Selection_base
• setLociDivCounter() : TTNeutralGenesSH
• setLogtime() : GenotyperFH
• setLookupTable() : GeneticMap
• setMainSim() : SIMenv
• setManager() : LCE_ParamUpdaterNotifier
• setMapIndex() : TTProtoWithMap
• setMatingSystem() : LCE_Breed_base
• setMeanFitness() : LCE_Selection_base
• setMeans() : LCE_Selection_base
• setMeanViability() : TTDeletMutBitstrSH
• setMode() : FileServices
• setMother() : Individual
• setMotherID() : Individual
• setMPImanager() : Metapop
• setMutationCorrelation() : TProtoQuanti
• setMutationModel_full_pleio() : TProtoQuanti
• setMutationModel_no_pleio() : TProtoQuanti
• setMutationModel_var_pleio() : TProtoQuanti
• setMutationSigmaFromQuantiMutationVariance() : TProtoQuanti
• setMutationSigmaFromQuantiMutationVariance_no_pleio() : TProtoQuanti
• setName() : Param , ParamSet , ParamsParser , StatRecBase
• setNeiGeneticDistance() : TTNeutralGenesSH
• setNeiGeneticDistanceRecorders() : TTNeutralGenesSH
• setNewGeneration() : Patch
• setNonRandom() : TProtoDispersal
• setNonSelectedTraitTable() : LCE_Breed_Selection
• setNumLociPerChromosome() : TTProtoWithMap
• setObsrvdExtinctionRate() : MPStatHandler
• setOcccurrence() : StatServices
• setOccurence() : LCE_StatServiceNotifier
• setOccurrences() : StatServices
• setOffsprgCoaBetween() : TTNeutralGenesSH
• setOffsprgCoaMatrix() : TTNeutralGenesSH
• setOffsprgCoaWithin() : TTNeutralGenesSH
• setOffsprgDeletStats() : TTDeletMutBitstrSH
• setOffsprgFstat() : TTNeutralGenesSH
• setOffsprgFstat2() : TTNeutralGenesSH
• setOffsprgFstBetween() : TTNeutralGenesSH
• setOffsprgFstMatrix() : TTNeutralGenesSH
• setOffsprgFstWithin() : TTNeutralGenesSH
• setOffsprgNeiGeneticDistance() : TTNeutralGenesSH
• setOffsprgStats() : TTBDMI_SH , TTQuantiSH
• setOffsprgTable() : LCE_SelectionSH
• setOffsprgViab() : TTDeletMutBitstrSH
• setOffspringAlleleFreq() : TTNeutralGenesSH
• setOffspringFstatWeirCockerham() : TTNeutralGenesSH
• setOffspringHeterozygosity() : TTNeutralGenesSH
• setOption() : MPFileHandler
• setOutputOption() : TTNeutralGenesFH , TTQuantiFH
• setOwner() : Param , ParamSet
• setParameters() : BinaryDataSaver , LCE_Aging , LCE_Breed , LCE_Breed_base , LCE_Breed_Disperse , LCE_Breed_Quanti , LCE_Breed_Selection , LCE_Breed_Selection_Disperse , LCE_Breed_Wolbachia , LCE_BreedAssortativeMating , LCE_Cross , LCE_Disperse_ConstDisp , LCE_Disperse_EvolDisp , LCE_FileServicesNotifier , LCE_Init_BDMI , LCE_NtrlInit , LCE_ParamUpdaterNotifier , LCE_Patch_Extinction , LCE_PhenotypeExpression , LCE_QuantiInit , LCE_QuantiModifier , LCE_Regulation , LCE_Resize , LCE_SeedDisp , LCE_Selection_base , LCE_StatServiceNotifier , Metapop , SimComponent , TProtoBDMI , TProtoDeletMutations_bitstring , TProtoDispersal , TProtoNeutralGenes , TProtoQuanti , TProtoWolbachia
• setParamPrefix() : LCE_Disperse_base
• setPatchCapacities() : Metapop
• setPatchFreq() : LCE_Init_BDMI
• setPatchNbr() : Metapop
• setPatchSizes() : Metapop
• setPedegreeCount() : MPStatHandler
• setPedigreeClass() : Individual
• setPhenotypeAncestryBased() : LCE_BreedAssortativeMating
• setPhenotypeMotherInherited() : LCE_BreedAssortativeMating
• setPopulation() : Metapop
• setPopulationFromSource() : Metapop
• setPopulationFromSourceInPreserveMode() : Metapop
• setPopulationParameters() : Metapop
• setPropaguleTargets() : LCE_Disperse_base
• setRandom() : TProtoDispersal
• setRecombinationMapFixed() : TTProtoWithMap
• setRecombinationMapNonRandom() : TTProtoWithMap
• setRecombinationMapRandom() : TTProtoWithMap
• setReducedDispMatrix() : LCE_Disperse_base
• setReducedMatricesBySex() : LCE_Disperse_base
• setReplicates() : Metapop , SimRunner
• setReproductiveStats() : MPStatHandler
• setReproScaledFitness_gsl() : LCE_Breed_Selection
• setReproScaledFitness_sum() : LCE_Breed_Selection
• setResolution() : GeneticMap
• setRootDir() : FileServices
• setScalingFactorAbsolute() : LCE_Selection_base
• setScalingFactorForLinearSelection() : LCE_Selection_base
• setScalingFactorGlobal() : LCE_Selection_base
• setScalingFactorLocal() : LCE_Selection_base
• setScalingFactorMaxGlobal() : LCE_Selection_base
• setScalingFactorMaxLocal() : LCE_Selection_base
• setSelectionMatrix() : LCE_Selection_base
• setSelectionParameters() : TProtoDeletMutations_bitstring
• setSex() : Individual
• setSexRatio() : LCE_Breed_base
• setSibCoa() : TTNeutralGenesSH
• setSibStats() : TTNeutralGenesSH
• setSourceParameters() : Metapop
• setSpatialPattern() : LCE_Init_BDMI
• setStatOptions() : StatServices
• setStatRecorders() : LCE_SelectionSH , MPStatHandler , StatHandlerBase , TTBDMI_SH , TTDeletMutBitstrSH , TTDispersalSH , TTNeutralGenesSH , TTQuantiSH , TTWolbachiaSH
• setStats() : TTBDMI_SH , TTQuantiSH
• setStatsForDeletMutations() : TTDeletMutBitstrSH
• setStatsForDemography() : MPStatHandler
• setStatsForMigrants() : MPStatHandler
• setStatsForMigrantsPerPatch() : MPStatHandler
• setStatsForPop() : MPStatHandler
• setStatsForPopPerPatch() : MPStatHandler
• setSteppingStone1DMatrix() : LCE_Disperse_base
• setTrait() : Individual
• setTraitAndLocusTables_full_pleio() : TProtoQuanti
• setTraitAndLocusTables_no_pleio() : TProtoQuanti
• setTraits() : GenotyperFH
• setTraitValue() : Individual
• setType() : Param
• setUpdater() : Param
• setVal() : StatRecBase , StatRecorder< S >
• setVefromVa() : LCE_Breed_Quanti , LCE_QuantiModifier
• setViability() : TTDeletMutBitstrSH
• setViabStats() : TTDeletMutBitstrSH
• show_up() : DataTable< T > , Individual , Metapop , Param , ParamSet , Patch , TMatrix , TT_BDMI , TTDeletMutations_bitstring , TTDispersal , TTNeutralGenes , TTQuanti_continuous_full_pleio , TTQuanti_continuous_full_pleio_epistasis , TTQuanti_continuous_no_pleio , TTQuanti_continuous_no_pleio_epistasis , TTQuanti_continuous_single , TTQuanti_continuous_var_pleio , TTQuanti_diallelic_bitstring_full_pleio , TTQuanti_diallelic_bitstring_no_pleio , TTQuanti_diallelic_bitstring_var_pleio , TTQuanti_diallelic_full_pleio , TTQuanti_diallelic_full_pleio_epistasis , TTQuanti_diallelic_no_pleio , TTQuanti_diallelic_no_pleio_epistasis , TTQuanti_diallelic_var_pleio , TTrait , TTWolbachia
• showGenoTable() : TProtoBDMI
• SimBuilder() : SimBuilder
• SimComponent() : SimComponent
• SIMenv() : SIMenv
• SimRunner() : SimRunner
• size() : bitstring , DataTable< T > , Metapop , MPIenv , ParamSet , Patch
• sizeChange() : DataTable< T >
• split() : tstring
• splitExcludeEnclosedDelimiters() : tstring
• STAT_IT : StatHandlerBase
• stat_it : StatServices
• StatHandler() : StatHandler< SH >
• StatHandlerBase() : StatHandlerBase
• StatRecBase() : StatRecBase
• StatRecorder() : StatRecorder< S >
• StatServices() : StatServices
• step() : SimRunner
• stochasticFecundityGrowth() : LCE_Breed_Disperse
• stochasticLogisticGrowth() : LCE_Breed_Disperse
• store() : BinaryStorageBuffer
• store_data() : Individual , Metapop , StorableComponent , TProtoBDMI , TProtoDeletMutations_bitstring , TProtoDispersal , TProtoNeutralGenes , TProtoQuanti , TProtoWolbachia , TT_BDMI , TTDeletMutations_bitstring , TTDispersal , TTNeutralGenes , TTQuanti_continuous , TTQuanti_diallelic , TTQuanti_diallelic_bitstring , TTWolbachia
• store_sizes() : DataTable< T >
• store_trait() : Metapop
• storeData() : BinaryDataSaver
• str2dble() : tstring
• str2int() : tstring
• str2uint() : tstring
• str2ulong() : tstring
• StreamParser() : StreamParser
• stripFormatString() : ParamManager
• subSamplePatch() : FileServices
• swap_new() : Patch
• swapPostDisp() : LCE_Disperse_base
• sym_matrix() : ParamsParser