#include <ttrait.h>

Inheritance diagram for TraitPrototype:

Collaboration diagram for TraitPrototype:

Public Member Functions
virtual void	reset ()=0
	Called at the end of a simulation to reset the Traits' prototypes (e.g. More...

virtual TTrait *	hatch ()=0
	Creates the trait of which it is the prototype, called by `IndFactory::makePrototype()`. More...

virtual TraitPrototype *	clone ()=0
	Returns a copy of itself. More...

virtual trait_t	get_type () const =0
	Type accessor. More...

virtual void	set_index (int idx)
	Sets the traits index. More...

virtual int	get_index ()
	Index getter. More...

virtual int	get_phenotype_dimension ()=0
	Returns the dimension of the phenotype of the trait (size of the array accessed with TTrait::getValue() More...

virtual int	get_allele_number ()=0
	Returns the number of allele per locus. More...

virtual int	get_locus_number ()=0
	Returns the number of locus. More...

virtual bool	is_mappable ()=0
	Checks if the trait is mappable, i.e., if the loci can be placed on a genetic map. More...

virtual bool	is_mapped ()=0
	Checks if the trait's loci are placed on a genetic map. More...

virtual vector< unsigned int >	get_locus_map_positions ()=0
	Returns the map positions of the loci in vector. More...

Public Member Functions inherited from StorableComponent
virtual void	store_data (BinaryStorageBuffer *saver)=0
	Interface to store the component data (e.g. gene values) into a binary buffer. More...

virtual bool	retrieve_data (BinaryStorageBuffer *reader)=0
	Interface to retrieve the same data from the binary buffer. More...

virtual	~StorableComponent ()

Public Member Functions inherited from SimComponent
	SimComponent ()

virtual	~SimComponent ()

virtual void	loadFileServices (FileServices *loader)=0
	Loads the component's FileHandler onto the FileServices. More...

virtual void	loadStatServices (StatServices *loader)=0
	Loads the component's StatHandler onto the StatServices. More...

virtual void	loadUpdaters (UpdaterServices *loader)
	Loads the parameters and component updater onto the updater manager. More...

virtual bool	setParameters ()=0
	Default interface needed to initialize the component's variables from its input parameters value. More...

virtual void	set_paramset (ParamSet *paramset)
	Sets the ParamSet member. More...

virtual void	set_paramset (std::string name, bool required, SimComponent *owner)
	Sets a new ParamSet and name it. More...

virtual void	set_paramsetFromCopy (const ParamSet &PSet)
	Reset the set of parameters from a another set. More...

virtual ParamSet *	get_paramset ()
	ParamSet accessor. More...

virtual void	add_parameter (Param *param)
	Interface to add a parameter to the set. More...

virtual void	add_parameter (std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd)
	Interface to add a parameter to the set. More...

virtual void	add_parameter (std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater)
	Interface to add a parameter and its updater to the set. More...

virtual Param *	get_parameter (std::string name)
	Param getter. More...

virtual double	get_parameter_value (std::string name)
	Param value getter. More...

virtual string	get_name ()
	Returnd the name of the ParamSet, i.e. More...

virtual bool	has_parameter (std::string name)
	Param getter. More...

virtual bool	resetParameterFromSource (std::string param, SimComponent *cmpt)=0

Protected Attributes
int	_index
	The trait index in the Individual traits table. More...

Protected Attributes inherited from SimComponent
ParamSet *	_paramSet
	The parameters container. More...

Detailed Description

TTrait setter.

Encapsulates the methods to set the traits parameters and to generate traits. Also stores the position of the trait in the individuals trait table. This class manages the file and stat handlers through its inheritance of the SimComponent interface.