84 virtual void set_allele_value (
unsigned int locus,
unsigned int allele,
double value) = 0;
Interface to all basic components of a simulation (traits, life cycle events, pop,...
Definition: simcomponent.h:45
Provides an interface to binary data saving and uploading.
Definition: simcomponent.h:162
Interface for all trait types, declares all basic trait operations.
Definition: ttrait.h:46
virtual void * set_trait(void *value)=0
Called to set the phenotypic to a particular value or to give context-dependant value(s) to the trait...
virtual bool operator==(const TTrait &)=0
Checks for parameters equivalence, not genetic equivalence.
virtual double get_allele_value(int loc, int all)=0
Called to read one allele value at a particular locus.
virtual void inherit(TTrait *mother, TTrait *father)=0
Inheritance procedure, creates a new trait from mother's and father's traits.
virtual trait_t get_type() const =0
type accessor.
virtual void mutate()=0
Mutation procedure, perform mutations on the genes sequence.
virtual void set_value()=0
Tells the trait to set its phenotype from genotype, should be used instead of getValue().
virtual void show_up()=0
Writes some info to stdout.
virtual void set_allele_value(unsigned int locus, unsigned int allele, double value)=0
Called to change the allelic value at a particular locus.
virtual void init()=0
Called to allocate the trait's genotypic sequences.
virtual void set_sequence(void **seq)=0
Called to set the sequence pointer to an existing trait.
virtual void * getValue() const =0
Genotype to phenotype mapper.
virtual ~TTrait()
Definition: ttrait.h:116
virtual void ** get_sequence() const =0
sequence accessor.
virtual bool operator!=(const TTrait &)=0
virtual void init_sequence()=0
Called at the start of each replicate, sets the initial genotypes.
virtual TTrait * clone()=0
Returns a copy of itself.
virtual TTrait & operator=(const TTrait &)=0
Copies the complete state of the trait from right to left side of the operator, sequence data include...
virtual void reset()=0
Called at the end of each simulation/replicate, deallocates sequence memory.
TTrait setter.
Definition: ttrait.h:125
virtual trait_t get_type() const =0
Type accessor.
virtual TTrait * hatch()=0
Creates the trait of which it is the prototype, called by IndFactory::makePrototype().
virtual void reset()=0
Called at the end of a simulation to reset the Traits' prototypes (e.g.
virtual TraitPrototype * clone()=0
Returns a copy of itself.
virtual int get_index()
Index getter.
Definition: ttrait.h:146
int _index
The trait index in the Individual traits table.
Definition: ttrait.h:129
virtual void set_index(int idx)
Sets the traits index.
Definition: ttrait.h:144
std::string trait_t
Trait types.
Definition: types.h:63