- s -

Sample() : RAND
sampleAmongPop() : LCE_Cross
SampleSeq() : RAND
SampleSeqWithReciprocal() : RAND
sampleWithinPop() : LCE_Cross
save_simparams() : FHLogWriter
ScrambleArrayUInt() : RAND
seq() : ParamsParser
Service() : Service
set() : bitstring, DataTable< T >, EventFileHandler< LCE >, FileHandler, Param, Patch, StatRecBase, StatRecorder< S >, StatServices, TMatrix, TraitFileHandler< TP >
set_2L() : TTNeutralGenes
set_age() : Patch
set_allele() : TTNeutralGenes, TTQuanti
set_allele_num() : TTNeutralGenes
set_allele_value() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
set_buff() : BinaryStorageBuffer
set_data() : bitstring
set_effect() : TProtoDeletMutations_bitstring
set_effects() : TProtoDeletMutations_bitstring, TTDeletMutations_bitstring
set_effects_exp() : TProtoDeletMutations_bitstring
set_effects_gamma() : TProtoDeletMutations_bitstring
set_effects_lognorm() : TProtoDeletMutations_bitstring
set_eVarianceSD() : TProtoQuanti
set_event_name() : LifeCycleEvent
set_ExecRank() : FileHandler
set_extension() : FileHandler
set_fit_model() : LCE_Selection_base
set_gender() : TTDispersal
set_GenerationOccurrence() : FileHandler
set_geno_rate() : TT_BDMI
set_genotype_value_additive() : TProtoQuanti
set_genotype_value_dominance() : TProtoQuanti
set_index() : TraitPrototype
set_inherit_func_ptr() : TT_BDMI, TTDeletMutations_bitstring, TTNeutralGenes
set_init_freq() : TProtoBDMI
set_init_model() : TTNeutralGenes
set_init_rate_fem() : TTDispersal
set_init_rate_mal() : TTDispersal
set_init_values() : TProtoQuanti
set_isExtinct() : Patch
set_isForward() : LCE_Disperse_base
set_isGenerationPeriodic() : FileHandler
set_isHaploid() : TT_BDMI
set_isInputHandler() : FileHandler
set_isMasterExec() : FileHandler
set_isReplicatePeriodic() : FileHandler
set_K() : Patch
set_KFem() : Patch
set_KMal() : Patch
set_local_optima() : LCE_Selection_base
set_locus_num() : TTNeutralGenes
set_matrix_param() : LCE_Patch_Extinction
set_multi() : FileHandler
set_mut_func_ptr() : TTNeutralGenes
set_mut_mean() : TTDispersal
set_mut_model() : TTNeutralGenes
set_mut_rate() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes
set_mutation_func_ptr() : TT_BDMI, TTDeletMutations_bitstring
set_mutation_matrix_decomposition() : TProtoQuanti
set_nb_hmz_mutations() : TTDeletMutations_bitstring
set_nb_htz_mutations() : TTDeletMutations_bitstring
set_nb_locus() : TT_BDMI, TTDeletMutations_bitstring
set_nb_mutations() : TTDeletMutations_bitstring
set_OccMatrix() : FileHandler
set_param() : ParamSet
set_param_rate_of_change() : LCE_Selection_base
set_parameters() : ParamManager
set_paramset() : LifeCycleEvent, SimComponent
set_paramsetFromCopy() : SimComponent
set_path() : FileHandler
set_phenotype() : TTQuanti
set_pop_ptr() : FileHandler, FileServices, LifeCycleEvent, StatServices
set_proto() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti
set_recomb_rate() : TT_BDMI, TTNeutralGenes
set_recomb_template() : TTDeletMutations_bitstring
set_ReplicateOccurrence() : FileHandler
set_sampling_params() : FileServices
set_sel_model() : LCE_Selection_base
set_sequence() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
set_service() : FileHandler, StatHandlerBase
set_statService() : LCE_StatFH
set_std_rate_of_change() : LCE_Selection_base
set_trait() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
set_trait_value_func_ptr() : TProtoQuanti
set_trait_value_noVE() : TProtoQuanti
set_trait_value_VE() : TProtoQuanti
set_transmit_rate() : TTWolbachia
set_value() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
set_viability_func_ptr() : TT_BDMI, TTDeletMutations_bitstring
set_write_fct() : TTNeutralGenesFH
setAdltNeiGeneticDistance() : TTNeutralGenesSH
setAdultAlleleFreq() : TTNeutralGenesSH
setAdultDeletStats() : TTDeletMutBitstrSH
setAdultHeterozygosity() : TTNeutralGenesSH
setAdults_Theta() : TTNeutralGenesSH
setAdultsCoaBetween() : TTNeutralGenesSH
setAdultsCoaMatrix() : TTNeutralGenesSH
setAdultsCoaWithin() : TTNeutralGenesSH
setAdultsFstat() : TTNeutralGenesSH
setAdultsFstat2() : TTNeutralGenesSH
setAdultsFstatWeirCockerham() : TTNeutralGenesSH
setAdultsFstBetween() : TTNeutralGenesSH
setAdultsFstMatrix() : TTNeutralGenesSH
setAdultsFstWithin() : TTNeutralGenesSH
setAdultStats() : TTBDMI_SH, TTQuantiSH
setAdultTable() : LCE_SelectionSH
setAdultViab() : TTDeletMutBitstrSH
setAge() : Individual
setAlleleTables() : TTNeutralGenesSH
setArg() : Param
setArgString() : ParamManager
setAtGeneration() : Param
setBasename() : FileServices
setBaseParameters() : LCE_Disperse_base
setBasicLatticeMatrix() : LCE_Disperse_base
setBounds() : Param
setCoaMatrix() : TTNeutralGenesSH
setCoaMatrixRecorders() : TTNeutralGenesSH
setCompactOutputFormat() : StatServices
setContinuousMutationModel() : TProtoQuanti
setCurrentAge() : Metapop
setCurrentGeneration() : Metapop, SimRunner
setCurrentID() : Individual
setCurrentReplicate() : Metapop, SimRunner
setDataTable() : LCE_SelectionSH
setDataTables() : TTQuantiSH
setDefaultOutputFormat() : StatServices
setDeletStats() : TTDeletMutBitstrSH
setDiallelicMutationModel() : TProtoQuanti
setDispMatrix() : LCE_Disperse_base
setDominanceParameters() : TProtoQuanti
setDxyRecorders() : TTNeutralGenesSH
setEffectsFromInput() : TProtoDeletMutations_bitstring
setElapsedTime() : SimRunner
setFather() : Individual
setFatherID() : Individual
setFecundity() : Individual, LCE_Breed_base
setFieldPrecision() : StatServices
setFieldSeparator() : StatServices
setFieldWidth() : StatServices
setFileDescriptor() : BinaryDataSaver
setFilename() : ParamManager
setForFirstGeneration() : SimRunner
setFormat() : FileMergerFH
setFreqRecorders() : TTNeutralGenesSH
setFreqRecordersPerPatch() : TTNeutralGenesSH
setFst() : TTDeletMutBitstrSH
setFst_li() : TTNeutralGenesSH
setFstat() : TTNeutralGenesSH
setFstat2() : TTNeutralGenesSH
setFstat2Recorders() : TTNeutralGenesSH
setFstatRecorders() : TTNeutralGenesSH
setFstatWCRecorders() : TTNeutralGenesSH
setFstatWeirCockerham() : TTNeutralGenesSH
setFstatWeirCockerham_MS() : TTNeutralGenesSH
setFstMatrix() : TTNeutralGenesSH
setFstMatrixRecorders() : TTNeutralGenesSH
setFuncPtr() : ParamUpdater< SC >
setGeneration() : BinaryDataLoader
setGenerations() : Metapop, SimRunner
setGeneticMapParameters() : TTProtoWithMap
setGenoFitnessValue() : TProtoBDMI
setHandler() : StatRecorder< S >
setHeteroTable() : TTNeutralGenesSH
setHeterozygosity() : TTNeutralGenesSH
setHo() : TTNeutralGenesSH
setHo2() : TTNeutralGenesSH
setHome() : Individual
setHs() : TTNeutralGenesSH
setHs2() : TTNeutralGenesSH
setHt() : TTNeutralGenesSH
setHt2() : TTNeutralGenesSH
setID() : Individual, Patch
setIndentityDispMatrix() : LCE_Disperse_base
setIndPhenotype() : LCE_Breed_Quanti, LCE_QuantiModifier
setInfectionStats() : TTWolbachiaSH
setIsBounded() : Param
setIsland_MigrantPool_Matrix() : LCE_Disperse_base
setIsland_PropagulePool_Matrix() : LCE_Disperse_base
setIsRequired() : Param, ParamSet
setIsSelfed() : Individual
setIsSet() : Param
setKinClassCounter() : MPStatHandler
setKinship() : MPStatHandler
setLatticeAbsorbingMatrix() : LCE_Disperse_base
setLatticeMatrix() : LCE_Disperse_base
setLatticeReflectingMatrix() : LCE_Disperse_base
setLatticeTorrusMatrix() : LCE_Disperse_base
setLethalEquivalents() : TTDeletMutBitstrSH
setLifeCycle() : SimRunner
setLocalOptima() : LCE_Selection_base
setLociDivCounter() : TTNeutralGenesSH
setLookupTable() : GeneticMap
setMainSim() : SIMenv
setManager() : LCE_ParamUpdaterNotifier
setMapIndex() : TTProtoWithMap
setMatingSystem() : LCE_Breed_base
setMeanFitness() : LCE_Selection_base
setMeans() : LCE_Selection_base
setMeanViability() : TTDeletMutBitstrSH
setMode() : FileServices
setMother() : Individual
setMotherID() : Individual
setMPImanager() : Metapop
setMutationParameters() : TProtoQuanti
setName() : Param, ParamSet, ParamsParser, StatRecBase
setNeiGeneticDistance() : TTNeutralGenesSH
setNeiGeneticDistanceRecorders() : TTNeutralGenesSH
setNewGeneration() : Patch
setNonRandom() : TProtoDispersal
setNonSelectedTraitTable() : LCE_Breed_Selection
setNumLociPerChromosome() : TTProtoWithMap
setObsrvdExtinctionRate() : MPStatHandler
setOcccurrence() : StatServices
setOccurence() : LCE_StatServiceNotifier
setOccurrences() : StatServices
setOffsprgCoaBetween() : TTNeutralGenesSH
setOffsprgCoaMatrix() : TTNeutralGenesSH
setOffsprgCoaWithin() : TTNeutralGenesSH
setOffsprgDeletStats() : TTDeletMutBitstrSH
setOffsprgFstat() : TTNeutralGenesSH
setOffsprgFstat2() : TTNeutralGenesSH
setOffsprgFstBetween() : TTNeutralGenesSH
setOffsprgFstMatrix() : TTNeutralGenesSH
setOffsprgFstWithin() : TTNeutralGenesSH
setOffsprgNeiGeneticDistance() : TTNeutralGenesSH
setOffsprgStats() : TTBDMI_SH, TTQuantiSH
setOffsprgTable() : LCE_SelectionSH
setOffsprgViab() : TTDeletMutBitstrSH
setOffspringAlleleFreq() : TTNeutralGenesSH
setOffspringFstatWeirCockerham() : TTNeutralGenesSH
setOffspringHeterozygosity() : TTNeutralGenesSH
setOption() : MPFileHandler
setOutputOption() : TTNeutralGenesFH, TTQuantiFH
setOwner() : Param, ParamSet
setParameters() : BinaryDataSaver, LCE_Aging, LCE_Breed, LCE_Breed_base, LCE_Breed_Disperse, LCE_Breed_Quanti, LCE_Breed_Selection, LCE_Breed_Selection_Disperse, LCE_Breed_Wolbachia, LCE_Cross, LCE_Disperse_ConstDisp, LCE_Disperse_EvolDisp, LCE_FileServicesNotifier, LCE_Init_BDMI, LCE_NtrlInit, LCE_ParamUpdaterNotifier, LCE_Patch_Extinction, LCE_QuantiInit, LCE_QuantiModifier, LCE_Regulation, LCE_Resize, LCE_SeedDisp, LCE_Selection_base, LCE_StatServiceNotifier, Metapop, SimComponent, TProtoBDMI, TProtoDeletMutations_bitstring, TProtoDispersal, TProtoNeutralGenes, TProtoQuanti, TProtoWolbachia
setParamPrefix() : LCE_Disperse_base
setPatchCapacities() : Metapop
setPatchFreq() : LCE_Init_BDMI
setPatchNbr() : Metapop
setPatchSizes() : Metapop
setPedegreeCount() : MPStatHandler
setPedigreeClass() : Individual
setPopulation() : Metapop
setPopulationFromSource() : Metapop
setPopulationFromSourceInPreserveMode() : Metapop
setPopulationParameters() : Metapop
setPropaguleTargets() : LCE_Disperse_base
setRandom() : TProtoDispersal
setRecombinationMapFixed() : TTProtoWithMap
setRecombinationMapNonRandom() : TTProtoWithMap
setRecombinationMapRandom() : TTProtoWithMap
setReducedDispMatrix() : LCE_Disperse_base
setReducedMatricesBySex() : LCE_Disperse_base
setReplicates() : Metapop, SimRunner
setReproductiveStats() : MPStatHandler
setReproScaledFitness_sum() : LCE_Breed_Selection
setResolution() : GeneticMap
setRootDir() : FileServices
setScalingFactorAbsolute() : LCE_Selection_base
setScalingFactorGlobal() : LCE_Selection_base
setScalingFactorLocal() : LCE_Selection_base
setScalingFactorMaxGlobal() : LCE_Selection_base
setScalingFactorMaxLocal() : LCE_Selection_base
setSelectionMatrix() : LCE_Selection_base
setSelectionParameters() : TProtoDeletMutations_bitstring
setSex() : Individual
setSexRatio() : LCE_Breed_base
setSibCoa() : TTNeutralGenesSH
setSibStats() : TTNeutralGenesSH
setSourceParameters() : Metapop
setSpatialPattern() : LCE_Init_BDMI
setStatOptions() : StatServices
setStatRecorders() : LCE_SelectionSH, MPStatHandler, StatHandlerBase, TTBDMI_SH, TTDeletMutBitstrSH, TTDispersalSH, TTNeutralGenesSH, TTQuantiSH, TTWolbachiaSH
setStats() : TTBDMI_SH, TTQuantiSH
setStatsForDeletMutations() : TTDeletMutBitstrSH
setStatsForDemography() : MPStatHandler
setStatsForMigrants() : MPStatHandler
setStatsForMigrantsPerPatch() : MPStatHandler
setStatsForPop() : MPStatHandler
setStatsForPopPerPatch() : MPStatHandler
setSteppingStone1DMatrix() : LCE_Disperse_base
setTrait() : Individual
setTraits() : FileMergerFH
setTraitValue() : Individual
setType() : Param
setUpdater() : Param
setVal() : StatRecBase, StatRecorder< S >
setVefromVa() : LCE_Breed_Quanti, LCE_QuantiModifier
setViability() : TTDeletMutBitstrSH
setViabStats() : TTDeletMutBitstrSH
show_up() : DataTable< T >, Individual, Metapop, Param, ParamSet, Patch, TMatrix, TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
showGenoTable() : TProtoBDMI
SimBuilder() : SimBuilder
SimComponent() : SimComponent
SIMenv() : SIMenv
SimRunner() : SimRunner
size() : bitstring, DataTable< T >, Metapop, ParamSet, Patch
sizeChange() : DataTable< T >
split() : tstring
splitExcludeEnclosedDelimiters() : tstring
StatHandler() : StatHandler< SH >
StatHandlerBase() : StatHandlerBase
StatRecBase() : StatRecBase
StatRecorder() : StatRecorder< S >
StatServices() : StatServices
step() : SimRunner
stochasticFecundityGrowth() : LCE_Breed_Disperse
stochasticLogisticGrowth() : LCE_Breed_Disperse
store() : BinaryStorageBuffer
store_data() : Individual, Metapop, StorableComponent, TProtoBDMI, TProtoDeletMutations_bitstring, TProtoDispersal, TProtoNeutralGenes, TProtoQuanti, TProtoWolbachia, TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTWolbachia
store_sizes() : DataTable< T >
store_trait() : Metapop
storeData() : BinaryDataSaver
str2dble() : tstring
str2int() : tstring
str2uint() : tstring
str2ulong() : tstring
StreamParser() : StreamParser
stripFormatString() : ParamManager
subSamplePatch() : FileServices
swap() : Patch
swapPostDisp() : LCE_Disperse_base
sym_matrix() : ParamsParser