- g -

Gamma() : RAND
gammln() : RAND
Gaussian() : RAND
generatePedigree() : LCE_Cross
GeneticMap() : GeneticMap
get() : DataTable< T >, Metapop, Patch, TMatrix
get_additive_genotype() : TTQuanti
get_age() : Patch
get_allele_model() : TProtoQuanti
get_allele_num() : TProtoNeutralGenes, TTNeutralGenes
get_allele_value() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
get_allele_values() : TProtoQuanti
get_allParams() : ParamManager
get_allRegisteredStats() : SimRunner
get_backmutation_rate() : TProtoDeletMutations_bitstring
get_current_event() : SimBuilder
get_current_eventWithParameter() : SimBuilder
get_current_trait() : SimBuilder
get_current_traitWithParameter() : SimBuilder
get_currentParams() : SimBuilder
get_dims() : TMatrix
get_dominance() : TProtoDeletMutations_bitstring, TProtoQuanti
get_dominance_effects() : TProtoQuanti
get_dominance_model() : TProtoDeletMutations_bitstring, TProtoQuanti
get_effect() : TProtoDeletMutations_bitstring
get_effects() : TProtoDeletMutations_bitstring
get_env_var() : TProtoQuanti
get_event_name() : LifeCycleEvent
get_ExecRank() : FileHandler
get_extension() : FileHandler
get_filename() : FileHandler
get_FileServices() : SimRunner
get_firstRecord() : ParamManager
get_fitness_scaling_factor() : TProtoDeletMutations_bitstring
get_full_genotype() : TTQuanti
get_GenerationOccurrence() : FileHandler
get_genotype() : TProtoQuanti
get_genotype_dominance_h() : TProtoQuanti
get_genotype_dominance_k() : TProtoQuanti
get_h2_isBroad() : TProtoQuanti
get_h2_setTime() : TProtoQuanti
get_harvest_size() : LCE_Patch_Extinction
get_heritability() : TProtoQuanti
get_hmz_atLocus() : TTDeletMutations_bitstring
get_hs_continous() : TProtoDeletMutations_bitstring
get_htz_atLocus() : TTDeletMutations_bitstring
get_index() : TraitPrototype
get_init_dist() : TProtoDispersal
get_init_dist_params() : TProtoDispersal
get_init_freq() : TProtoBDMI, TProtoDeletMutations_bitstring
get_init_mode() : TProtoDispersal
get_init_value() : TProtoQuanti
get_inputParams() : ParamsParser
get_isAlive() : MPStatHandler
get_iscontinuous() : TProtoDeletMutations_bitstring
get_isExtinct() : Patch
get_isGenerationPeriodic() : FileHandler
get_isInputHandler() : FileHandler
get_isMasterExec() : FileHandler
get_isReplicatePeriodic() : FileHandler
get_K() : Patch
get_KFem() : Patch
get_KMal() : Patch
get_LCE() : ComponentManager
get_locus_num() : TProtoNeutralGenes, TTNeutralGenes
get_mut_rate() : TProtoBDMI, TProtoDeletMutations_bitstring
get_mutation_correlation() : TProtoQuanti
get_name() : SimComponent
get_nb_hmz_mutations() : TTDeletMutations_bitstring
get_nb_htz_mutations() : TTDeletMutations_bitstring
get_nb_locus() : TProtoBDMI, TProtoDeletMutations_bitstring, TProtoQuanti
get_nb_mut_atLocus() : TTDeletMutations_bitstring
get_nb_mutations() : TTDeletMutations_bitstring
get_nb_traits() : TProtoQuanti
get_nbSims() : ParamManager
get_num_mut_diplo() : TT_BDMI
get_num_mut_haplo() : TT_BDMI
get_OccMatrix() : FileHandler
get_param() : ParamSet
get_parameter() : SimComponent
get_parameter_value() : SimComponent
get_params() : FileServices
get_paramset() : ParamManager, SimComponent
get_parent() : LCE_Breed_Disperse
get_path() : FileHandler
get_ploidy() : TProtoNeutralGenes, TTNeutralGenes
get_pop() : SimRunner
get_pop_ptr() : FileHandler, FileServices, LifeCycleEvent, StatHandlerBase, StatServices
get_rank() : LifeCycleEvent
get_ReplicateOccurrence() : FileHandler
get_s_continous() : TProtoDeletMutations_bitstring
get_seq_length() : TProtoQuanti
get_sequence() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
get_service() : FileHandler, StatHandlerBase
get_simRecords() : ParamManager
get_stater() : TProtoNeutralGenes, TProtoQuanti
get_StatServices() : SimRunner
get_strength() : TProtoDeletMutations_bitstring
get_trait() : ComponentManager
get_trait_var() : TProtoQuanti
get_type() : TProtoBDMI, TProtoDeletMutations_bitstring, TProtoDispersal, TProtoNeutralGenes, TProtoQuanti, TProtoWolbachia, TraitPrototype, TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
getAdultSexRatio() : MPStatHandler
getAdultsLetheq() : TTDeletMutBitstrSH
getAdultsNumber() : Patch
getAge() : Individual, StatRecBase
getAlleleCountTable() : TTNeutralGenesSH
getAlleleFreqTable() : TTNeutralGenesSH
getAllIndividuals() : Metapop
getAllParams() : ParamSet
getAllStats() : StatServices
getArg() : Param, ParamSet
getArg1() : StatRecBase
getArg2() : StatRecBase
getArgumentFromFile() : Param
getArguments() : ParamsParser
getBalpha() : TTDeletMutBitstrSH
getBaseFileName() : FileServices
getBlock() : tstring
getBlockArgument() : ParamsParser
getBound() : Param
getBtheta() : TTDeletMutBitstrSH
getBuffer() : BinaryDataLoader, BinaryStorageBuffer
getBuffLength() : BinaryStorageBuffer
getBytesOut() : BinaryStorageBuffer
getClassWithinGroup() : DataTable< T >
getCoa() : TTNeutralGenesSH
getColumnView() : TMatrix
getComponent() : ParamUpdater< SC >, ParamUpdaterBase
getCopy() : Patch
getCovar() : TTQuantiSH
getCovarPerPatch() : TTQuantiSH
getCurrentAge() : Metapop
getCurrentGeneration() : Metapop, SIMenv, SimRunner
getcurrentID() : Individual
getCurrentOccurrence() : StatHandlerBase, StatServices
getCurrentRankInLifeCycle() : SIMenv, SimRunner
getCurrentReplicate() : Metapop, SIMenv, SimRunner
getDeletAllFreq() : TTDeletMutBitstrSH
getDeletAllHmz() : TTDeletMutBitstrSH
getDeletAllHtz() : TTDeletMutBitstrSH
getDeletAllPerGenome() : TTDeletMutBitstrSH
getDemicExtinctionRate() : TTWolbachiaSH
getDemicInfectionVar() : TTWolbachiaSH
getDensity() : Patch
getDispersalModel() : LCE_Disperse_base
getDxy() : TTNeutralGenesSH
getDxyAdultPerPatch() : TTNeutralGenesSH
getDxyOffspringPerPatch() : TTNeutralGenesSH
getDxyPerPatch() : TTNeutralGenesSH
getEigenValue() : TTQuantiSH
getEigenValuePerPatch() : TTQuantiSH
getEigenVectorElt() : TTQuantiSH
getEigenVectorEltPerPatch() : TTQuantiSH
getEmigrantInPatch() : MPStatHandler
getExternalFiles() : Param
getFather() : Individual
getFatherID() : Individual
getFatherPtr() : LCE_Breed_base
getFecundity() : Individual, LCE_Breed_base
getFecWithHomePatchMate() : Individual
getFecWithOtherPatchMate() : Individual
getFemNumber() : MPStatHandler
getFH() : LCE_StatServiceNotifier
getFileDescriptor() : BinaryDataSaver
getFirst() : StatServices
getFirstReader() : FileServices
getFirstRecPosition() : GeneticMap
getFirstReplicateFileName() : FileServices
getFirstRequiredAgeInLifeCycle() : SimBuilder
getFirstWriter() : FileServices
getFis() : TTNeutralGenesSH
getFisWC() : TTNeutralGenesSH
getFit() : TTNeutralGenesSH
getFitness() : LCE_Selection_base, LCE_SelectionSH
getFitnessAbsolute() : LCE_Selection_base
getFitnessDirect() : LCE_Selection_base
getFitnessFixedEffect() : LCE_Selection_base
getFitnessMultivariateGaussian() : LCE_Selection_base
getFitnessMultivariateGaussian_VE() : LCE_Selection_base
getFitnessRelative() : LCE_Selection_base
getFitnessUnivariateGaussian() : LCE_Selection_base
getFitnessUnivariateGaussian_VE() : LCE_Selection_base
getFitnessUnivariateQuadratic() : LCE_Selection_base
getFitWC() : TTNeutralGenesSH
getFixedDeletLoci() : TTDeletMutBitstrSH
getFixedDeletLociPerPatch() : TTDeletMutBitstrSH
getFixedFecundity() : LCE_Breed_base
getFixLocGlobal() : TTNeutralGenesSH
getFixLocLocal() : TTNeutralGenesSH
getFreq() : TTBDMI_SH
getFreqIcmp() : TTBDMI_SH
getFst() : TTDeletMutBitstrSH, TTNeutralGenesSH
getFst_ij() : TTNeutralGenesSH
getFstWC() : TTNeutralGenesSH
getGaussianFecundity() : LCE_Breed_base
getGeneration() : BinaryDataLoader
getGenerationCounter() : FileServices
getGenerationReplicateFileName() : FileServices
getGenerations() : Metapop, SIMenv, SimRunner
getGenerationStatValues() : StatServices
getGeneticMap() : GeneticMap
getGenoFitnessDiplo() : TProtoBDMI
getGenoFitnessHaplo() : TProtoBDMI
getGlobalAlleleFreq() : TTNeutralGenesSH
getGlobalFreqs() : TTNeutralGenesSH
getGroup() : DataTable< T >
getHeterosis() : TTDeletMutBitstrSH
getHeteroTable() : TTNeutralGenesSH
getHeterozygosity() : TTNeutralGenesSH
getHo() : TTNeutralGenesSH
getHome() : Individual
getHs() : TTDeletMutBitstrSH, TTNeutralGenesSH
getHsnei() : TTNeutralGenesSH
getHt() : TTDeletMutBitstrSH, TTNeutralGenesSH
getHtnei() : TTNeutralGenesSH
getIcompatibleMatingFreq() : TTWolbachiaSH
getID() : Individual, Patch
getImigrateInPatch() : MPStatHandler
getIndividualProtoype() : IndFactory
getIsSelfed() : Individual
getKolonisersInPatch() : MPStatHandler
getLast() : StatServices
getLastReader() : FileServices
getLastWriter() : FileServices
getLethalEquivalents() : TTDeletMutBitstrSH
getLoad() : TTDeletMutBitstrSH
getLocalMatings() : Individual
getLocalRealizedFecundity() : Individual
getLocusPositionTable() : GeneticMap
getLogNormalFecundity() : LCE_Breed_base
getMacroArgs() : ParamsParser
getMacroParamValue() : ParamsParser
getMacroSepParamChar() : ParamsParser
getMalNumber() : MPStatHandler
getMapIndex() : TTProtoWithMap
getMatingProportion() : LCE_Breed_base
getMatings() : Individual
getMatingSystem() : LCE_Breed_base
getMatrix() : Param, ParamSet
getMaxFitness() : LCE_Selection_base
getMaxPatchFitness() : LCE_Selection_base
getMeanAlpha() : TTNeutralGenesSH
getMeanAssignedFecundity() : MPStatHandler
getMeanDispRate() : TTDispersalSH
getMeanDispRateInPatch() : TTDispersalSH
getMeanEmigrantPerPatch() : MPStatHandler
getmeanFD() : TTDispersalSH
getMeanFecundity() : LCE_Breed_base
getMeanFecWithPatchMate() : TTDeletMutBitstrSH
getMeanFemaleInfection_perPatch() : TTWolbachiaSH
getMeanFemDispRate() : TTDispersalSH
getMeanFitness() : LCE_Selection_base, LCE_SelectionSH
getMeanImigrantPerPatch() : MPStatHandler
getMeanInfection() : TTWolbachiaSH
getMeanKolonisersPerPatch() : MPStatHandler
getMeanKolonisersProportion() : MPStatHandler
getMeanMalDispRate() : TTDispersalSH
getMeanMaleInfection_perPatch() : TTWolbachiaSH
getMeanMatings() : MPStatHandler
getmeanMD() : TTDispersalSH
getMeanMigrantRatio() : MPStatHandler
getMeanNeiGeneticDistance() : TTNeutralGenesSH
getmeanOFD() : TTDispersalSH
getMeanOffsprgFemaleInfection_perPatch() : TTWolbachiaSH
getMeanOffsprgInfection() : TTWolbachiaSH
getMeanOffsprgMaleInfection_perPatch() : TTWolbachiaSH
getmeanOMD() : TTDispersalSH
getMeanPatchAge() : MPStatHandler
getMeanPatchDensity() : MPStatHandler
getMeanPatchDensityVariance() : MPStatHandler
getMeanPatchFitness() : LCE_Selection_base, LCE_SelectionSH
getMeanPatchSize() : MPStatHandler
getMeanPatchSizePerSex() : MPStatHandler
getMeanPhenot() : TTQuantiSH
getMeanPhenotPerPatch() : TTQuantiSH
getMeanResidantPerPatch() : MPStatHandler
getMeanTheta() : TTNeutralGenesSH
getMeanViability() : TTDeletMutBitstrSH
getMigrationPatchBackward() : LCE_Disperse_base
getMigrationPatchForward() : LCE_Disperse_base
getMode() : FileServices
getMother() : Individual
getMotherID() : Individual
getMultiArgs() : Param
getMutationEffectBivariateDiallelic() : TProtoQuanti
getMutationEffectBivariateGaussian() : TProtoQuanti
getMutationEffectMultivariateGaussian() : TProtoQuanti
getMutationEffectUnivariateDiallelic() : TProtoQuanti
getMutationEffectUnivariateGaussian() : TProtoQuanti
getName() : Param, ParamSet, StatRecBase
getNbAllGlobal() : TTNeutralGenesSH
getNbAllLocal() : TTNeutralGenesSH
getNbCols() : TMatrix
getNbRecorders() : StatHandlerBase
getNbRows() : TMatrix
getNeiGeneticDistance() : TTNeutralGenesSH
getNewIndividual() : IndFactory
getNewSimulation() : SIMenv
getNumClasses() : DataTable< T >
getNumGroups() : DataTable< T >
getNumOccurrences() : StatHandlerBase, StatServices
getNumStats() : StatServices
getObsrvdExtinctionRate() : MPStatHandler
getOccurrence() : StatHandlerBase, StatServices
getOffFemNumber() : MPStatHandler
getOffMalNumber() : MPStatHandler
getOffsprgLetheq() : TTDeletMutBitstrSH
getOffsprgMeanDispRate() : TTDispersalSH
getOffsprgSex() : LCE_Breed_base
getOffsprgSexCloning() : LCE_Breed_base
getOffsprgSexFixed() : LCE_Breed_base
getOffsprgSexRandom() : LCE_Breed_base
getOffsprgSexRatio() : MPStatHandler
getOffsprgSexSelfing() : LCE_Breed_base
getOwner() : Param
getParameters() : ParamsParser
getParams() : ParamUpdaterBase
getParsedParameters() : ParamsParser
getPatch() : Metapop
getPatchAge() : MPStatHandler
getPatchArray() : Metapop
getPatchArraySize() : Metapop
getPatchCapacities() : Metapop
getPatchCapacity() : Metapop
getPatchDisp_AF() : TTDispersalSH
getPatchDisp_AM() : TTDispersalSH
getPatchDisp_OF() : TTDispersalSH
getPatchDisp_OM() : TTDispersalSH
getPatchFreq() : TTBDMI_SH
getPatchIcmp() : TTBDMI_SH
getPatchKFem() : Metapop
getPatchKMal() : Metapop
getPatchLoad() : TTDeletMutBitstrSH
getPatchNbr() : Metapop
getPatchPtr() : Metapop
getPatchSize() : MPStatHandler
getPedigree() : FHPedigreeReader
getPedigreeClass() : Individual
getPedProp() : LCE_SelectionSH
getPedProportion() : MPStatHandler
getPoissonFecundity() : LCE_Breed_base
getPop() : BinaryDataLoader
getPopulationSize() : MPStatHandler
getPrintAveragesOpt() : StatServices
getPropaguleProb() : LCE_Disperse_base
getPropaguleTarget() : LCE_Disperse_base
getPrototypeClone() : IndFactory
getQst() : TTQuantiSH
getReader() : FileServices
getRealizedFecundity() : Individual
getRecLoci() : GeneticMap
getReplicateCounter() : FileServices
getReplicateFileName() : FileServices
getReplicates() : Metapop, SIMenv, SimRunner
getReplicateStatRecords() : StatServices
getReproductiveVar() : MPStatHandler
getResidantInPatch() : MPStatHandler
getResolution() : GeneticMap
getRootDir() : FileServices
getRowView() : TMatrix
getSampledPop() : FileServices
getSegregatingDeletLoci() : TTDeletMutBitstrSH
getSegregatingDeletLociPerPatch() : TTDeletMutBitstrSH
getSex() : Individual
getSibCoaMeans() : TTNeutralGenesSH
getSibProportion() : MPStatHandler
getSibProportions() : TTDeletMutBitstrSH, TTNeutralGenesSH
getSim() : BinaryDataLoader
getSkewPerPatch() : TTQuantiSH
getSNPalleleFreqInPatch() : TTQuantiSH
getSourceFileType() : Metapop
getSourceName() : Metapop
getSourceReplDigits() : Metapop
getStatArg() : StatServices
getStats() : StatHandlerBase
getSurvival() : LCE_SelectionSH
getTable() : DataTable< T >
getTemporalArgs() : Param
getTheta_FF() : TTNeutralGenesSH
getTheta_FM() : TTNeutralGenesSH
getTheta_MM() : TTNeutralGenesSH
getTitle() : StatRecBase
getTotByteRecorded() : BinaryStorageBuffer
getTotMatings() : Individual
getTotRealizedFecundity() : Individual
getTrait() : Individual
getTraitIndex() : IndFactory
getTraitNumber() : Individual
getTraitPrototype() : IndFactory
getTraitPrototypes() : IndFactory
getTraits() : Individual
getTraitValue() : Individual
getType() : Param
getUpdater() : Param
getUpdaters() : ParamSet
getUpdatingDates() : Param
getVa() : TTQuantiSH
getValArray() : TMatrix
getValue() : Param, ParamSet, TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
getVaNoDominance() : TTQuantiSH
getVaPerPatch() : TTQuantiSH
getVariableMatrix() : Param
getVarPatchFitness() : LCE_SelectionSH
getVaWithDominance() : TTQuantiSH
getVb() : TTQuantiSH
getVg() : TTQuantiSH
getViability() : TTDeletMutBitstrSH
getVp() : TTQuantiSH
getVpPerPatch() : TTQuantiSH
getWeightedFst() : TTNeutralGenesSH
getword_atIdx() : bitstring
getword_atPos() : bitstring