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Nemo
2.4.0b
Simulate forward-in-time genetic evolution in a spatially explicit, individual-based stochastic simulator
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Text input parameter file parser. More...
#include <fileparser.h>
Inheritance diagram for FileParser:
Collaboration diagram for FileParser:Public Member Functions | |
| FileParser (const char *stream) | |
| virtual | ~FileParser () |
| virtual bool | read (const char *stream) |
Public Member Functions inherited from StreamParser | |
| StreamParser (const char *stream) | |
| virtual | ~StreamParser () |
| virtual bool | readArguments (istream &IN, int &l_count, string &args) |
| void | replaceCR (string &stream, const char rpl='\n') |
Public Member Functions inherited from ParamsParser | |
| ParamsParser (const char *name) | |
| virtual | ~ParamsParser () |
| void | setName (const char *name) |
| map< string, string > | get_inputParams () |
| map< string, vector< string > > & | getParsedParameters (const char *stream_name) |
| map< string, vector< string > > & | getParsedParameters () |
| map< string, string > & | getParameters (const char *stream_name) |
| map< string, string > & | getParameters () |
| void | parse () |
| Builds the _parsedParams from the _inputParams. More... | |
| string | replaceMacro (const string &arg) |
| Macros. More... | |
| string | parseMacroFunctionBlock (const string &in_arg) |
| string | callMacro (const string &name, const string &argstr) |
| vector< string > | getMacroArgs (const string &args, const int min_arg, const size_t max_arg, const string macro_name, const string syntax, bool lastArgIsSeparatorChar=true) |
| string | getMacroSepParamChar (const string &sep_in, const string macro_name) |
| string | getMacroParamValue (const string &str_in, const string &par_name, const string ¯o_name) |
| string | quote (const string &argstr) |
| Macro "q" returns a quoted string. More... | |
| string | concat (const string &argstr) |
| Macro "c" returns a character-delimited string of atomic arguments. More... | |
| string | rep (const string &argstr) |
| string | seq (const string &argstr) |
| string | tempseq (const string &argstr) |
| string | matrix (const string &argstr) |
| string | diag_matrix (const string &argstr) |
| string | sym_matrix (const string &argstr) |
| string | runif (const string &argstr) |
| string | rnorm (const string &argstr) |
| string | rpoiss (const string &argstr) |
| string | rbernoul (const string &argstr) |
| string | rgamma (const string &argstr) |
| string | rlognorm (const string &argstr) |
| string | rexp (const string &argstr) |
Additional Inherited Members | |
Static Public Member Functions inherited from StreamParser | |
| static bool | removeComment (istream &IN, int &l_count) |
| Recusively removes comments until the end of a line/of the file, or of a block comment is reached. More... | |
| static bool | removeSpaceAndComment (istream &IN, int &l_count, bool keepLast=false) |
| Removes whitespace char on a line until a non-ws or EOL is reached. More... | |
| static string | readUntilCharacter (istream &IN, int &l_count, const char start_c, const char end_c) |
| static void | eatLine (istream &IN, int &l_count) |
Static Public Member Functions inherited from ParamsParser | |
| static void | getBlockArgument (istream &IN, char &c, string &arg) |
| static void | getArguments (string &arg_str, vector< string > &arg_vect) |
Protected Member Functions inherited from ParamsParser | |
| void | reset_inputParams () |
| void | add_inputParam (string ¶m, const string &arg) |
Text input parameter file parser.
This class provides the StreamParser with the whole content of the input file.
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inline |
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virtual |
Reimplemented from StreamParser.
References _myenv, fatal(), MPIenv::isMaster(), message(), and StreamParser::read().
1.9.1 -- Nemo is hosted on