LCE_SelectionFH Class Reference

#include <LCEselection.h>

Inheritance diagram for LCE_SelectionFH:

Collaboration diagram for LCE_SelectionFH:

Public Member Functions
	LCE_SelectionFH (LCE_Selection_base *event)
virtual	~LCE_SelectionFH ()
virtual void	FHwrite ()
virtual void	FHread (string &filename)
void	print (ofstream &FH, sex_t SEX, age_idx AGE, unsigned int i, Patch *patch, unsigned int ntraits)
Public Member Functions inherited from EventFileHandler< LCE_Selection_base >
	EventFileHandler (LCE_Selection_base *event, const char *ext)
virtual	~EventFileHandler ()
virtual void	FHwrite ()=0
virtual void	FHread (string &filename)=0
virtual void	set (bool rpl_per, bool gen_per, int rpl_occ, int gen_occ, int rank, string path, LCE_Selection_base *event)
Public Member Functions inherited from FileHandler
	FileHandler (const char *ext)
virtual	~FileHandler ()
virtual void	init ()
	Called by notifier during simulation setup, performs file checking. More...
virtual vector< string >	ifExist ()
	Checks if any file associated with the current file name already exists on disk. More...
virtual void	set (bool rpl_per, bool gen_per, int rpl_occ, int gen_occ, int rank, string path)
	Sets the hanlder parameters. More...
virtual void	set_multi (bool rpl_per, bool gen_per, int rpl_occ, TMatrix *Occ, string path)
virtual void	FHwrite ()=0
	Default behavior of the class, called by Handler::update(). More...
virtual void	FHread (string &filename)=0
	Default input function. More...
virtual void	update ()
	Updates the inner replicate and generation counters and calls FHwrite if needed by the the periodicity of the file. More...
Metapop *	get_pop_ptr ()
	Returns the pointer to the current metapop through the FileServices interface. More...
void	set_pop_ptr (Metapop *pop_ptr)
FileServices *	get_service ()
	Returns pointer to the FileServices. More...
void	set_service (FileServices *srv)
std::string &	get_path ()
void	set_path ()
std::string &	get_extension ()
void	set_extension (const char *ext)
std::string &	get_filename ()
	Builds and returns the current file name depending on the periodicity of the file. More...
bool	get_isInputHandler ()
void	set_isInputHandler (bool val)
bool	get_isReplicatePeriodic ()
void	set_isReplicatePeriodic (bool val)
unsigned int	get_ReplicateOccurrence ()
void	set_ReplicateOccurrence (unsigned int val)
bool	get_isGenerationPeriodic ()
void	set_isGenerationPeriodic (bool val)
unsigned int	get_GenerationOccurrence ()
void	set_GenerationOccurrence (unsigned int val)
unsigned int	get_ExecRank ()
	unused yet... More...
void	set_ExecRank (int val)
TMatrix *	get_OccMatrix ()
void	set_OccMatrix (TMatrix *occ)
bool	get_isMasterExec ()
void	set_isMasterExec (bool is)
Public Member Functions inherited from Handler
virtual void	init ()=0
	Inits state. More...
virtual void	update ()=0
	Updates the handler state. More...
virtual	~Handler ()

Additional Inherited Members
Protected Attributes inherited from EventFileHandler< LCE_Selection_base >
LCE_Selection_base *	_FHLinkedEvent
Protected Attributes inherited from FileHandler
Metapop *	_pop
	Pointer to the current metapop, set during initialization within the init function. More...

Constructor & Destructor Documentation

LCE_SelectionFH()

LCE_SelectionFH::LCE_SelectionFH ( LCE_Selection_base *  event )

inline

: EventFileHandler< LCE_Selection_base >(event, ".fit") { }

~LCE_SelectionFH()

virtual LCE_SelectionFH::~LCE_SelectionFH ( )

inlinevirtual

{}

Member Function Documentation

FHread()

virtual void LCE_SelectionFH::FHread ( string &  filename )

inlinevirtual

Implements FileHandler.

{}

FHwrite()

void LCE_SelectionFH::FHwrite ( )

virtual

Implements EventFileHandler< LCE_Selection_base >.

{
  unsigned int num_traits = _FHLinkedEvent->_TraitIndices.size();
  
  std::string filename = get_filename();
  
  std::ofstream FILE (filename.c_str(), ios::out);
  
  if(!FILE) fatal("could not open \"%s\" output file!!\n",filename.c_str());
 
  FILE<<"pop";
  
  for (unsigned int i = 0; i < num_traits; ++i) {
    FILE<<" trait"<< tstring::int2str(i+1);
  }
  
  FILE<< " age isMigrant"<<endl;
  
  
  Patch* patch;
  
  for(unsigned int i = 0; i < _pop->getPatchNbr(); ++i ) {
    
    patch = _pop->getPatch(i);
    
    if (patch->size(FEM, OFFSx) != 0) print(FILE, FEM, OFFSx, i, patch, num_traits);
    if (patch->size(MAL, OFFSx) != 0) print(FILE, MAL, OFFSx, i, patch, num_traits);
    
    if (patch->size(FEM, ADLTx) != 0) print(FILE, FEM, ADLTx, i, patch, num_traits);
    if (patch->size(MAL, ADLTx) != 0) print(FILE, MAL, ADLTx, i, patch, num_traits);
    
  }
 
  
  FILE.close();
}

References EventFileHandler< LCE_Selection_base >::_FHLinkedEvent, FileHandler::_pop, LCE_Selection_base::_TraitIndices, ADLTx, fatal(), FEM, FileHandler::get_filename(), Metapop::getPatch(), Metapop::getPatchNbr(), tstring::int2str(), MAL, OFFSx, print(), and Patch::size().

print()

void LCE_SelectionFH::print	(	ofstream &	FH,
		sex_t	SEX,
		age_idx	AGE,
		unsigned int	i,
		Patch *	patch,
		unsigned int	ntraits
	)

{
  Individual* ind = 0;
  
  for (unsigned int i = 0; i < patch->size(SEX, AGE); ++i) {
    
    ind = patch->get(SEX, AGE, i);
    
    FH<<p+1;
    
    for(unsigned int j = 0; j < ntraits; ++j) 
      FH<<" "<<(_FHLinkedEvent->*_FHLinkedEvent->_getRawFitness[j])(ind, p, _FHLinkedEvent->_TraitIndices[j]);
  
    FH<<" "<<ind->getAge()<< " "<< (p == ind->getHome() ? 0 : 1) <<endl;
  }
}

References EventFileHandler< LCE_Selection_base >::_FHLinkedEvent, LCE_Selection_base::_getRawFitness, LCE_Selection_base::_TraitIndices, Patch::get(), Individual::getAge(), Individual::getHome(), and Patch::size().

Referenced by FHwrite().

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The documentation for this class was generated from the following files:

• LCEselection.h
• LCEselection.cc