| _back_mutation_rate | TProtoDeletMutations_bitstring | private |
| _chrsmLength | TTProtoWithMap | protected |
| _continuous_effects | TProtoDeletMutations_bitstring | private |
| _dist_p1 | TProtoDeletMutations_bitstring | private |
| _dist_p2 | TProtoDeletMutations_bitstring | private |
| _dominance | TProtoDeletMutations_bitstring | private |
| _dominance_model | TProtoDeletMutations_bitstring | private |
| _effects | TProtoDeletMutations_bitstring | private |
| _fitness_model | TProtoDeletMutations_bitstring | private |
| _fitness_scaling_factor | TProtoDeletMutations_bitstring | private |
| _index | TraitPrototype | protected |
| _inherit_func_ptr | TProtoDeletMutations_bitstring | private |
| _init_freq | TProtoDeletMutations_bitstring | private |
| _isRegistered | TTProtoWithMap | private |
| _lociMapPositions | TTProtoWithMap | protected |
| _map | TTProtoWithMap | static |
| _mapIndex | TTProtoWithMap | protected |
| _mapResolution | TTProtoWithMap | protected |
| _mut_rate | TProtoDeletMutations_bitstring | private |
| _mutation_model | TProtoDeletMutations_bitstring | private |
| _nb_locus | TProtoDeletMutations_bitstring | private |
| _numChromosome | TTProtoWithMap | protected |
| _numLoci | TTProtoWithMap | protected |
| _numLociPerChrmsm | TTProtoWithMap | protected |
| _paramPrefix | TTProtoWithMap | private |
| _paramSet | SimComponent | protected |
| _reader | TProtoDeletMutations_bitstring | private |
| _recombRate | TTProtoWithMap | protected |
| _recombRatePerChrmsm | TTProtoWithMap | protected |
| _set_effects_func | TProtoDeletMutations_bitstring | private |
| _stats | TProtoDeletMutations_bitstring | private |
| _strength | TProtoDeletMutations_bitstring | private |
| _totRecombEventsMean | TTProtoWithMap | protected |
| _viability_func_ptr | TProtoDeletMutations_bitstring | private |
| _writer | TProtoDeletMutations_bitstring | private |
| add_parameter(Param *param) | SimComponent | inlinevirtual |
| add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd) | SimComponent | inlinevirtual |
| add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater) | SimComponent | inlinevirtual |
| addGeneticMapParameters(string prefix) | TTProtoWithMap | |
| areGeneticMapParamSet(string prefix) | TTProtoWithMap | |
| clone() | TProtoDeletMutations_bitstring | inlinevirtual |
| get_backmutation_rate() | TProtoDeletMutations_bitstring | inline |
| get_dominance() | TProtoDeletMutations_bitstring | inline |
| get_dominance_model() | TProtoDeletMutations_bitstring | inline |
| get_effect(unsigned int at, unsigned int loc) | TProtoDeletMutations_bitstring | inline |
| get_effects() const | TProtoDeletMutations_bitstring | inline |
| get_fitness_scaling_factor() | TProtoDeletMutations_bitstring | inline |
| get_hs_continous() | TProtoDeletMutations_bitstring | inline |
| get_index() | TraitPrototype | inlinevirtual |
| get_init_freq() | TProtoDeletMutations_bitstring | inline |
| get_iscontinuous() | TProtoDeletMutations_bitstring | inline |
| get_mut_rate() | TProtoDeletMutations_bitstring | inline |
| get_name() | SimComponent | inlinevirtual |
| get_nb_locus() | TProtoDeletMutations_bitstring | inline |
| get_parameter(std::string name) | SimComponent | inlinevirtual |
| get_parameter_value(std::string name) | SimComponent | inlinevirtual |
| get_paramset() | SimComponent | inlinevirtual |
| get_s_continous() | TProtoDeletMutations_bitstring | inline |
| get_strength() | TProtoDeletMutations_bitstring | inline |
| get_type() const | TProtoDeletMutations_bitstring | inlinevirtual |
| getMapIndex() | TTProtoWithMap | inline |
| has_parameter(std::string name) | SimComponent | inlinevirtual |
| hatch() | TProtoDeletMutations_bitstring | virtual |
| inherit_free(sex_t SEX, bitstring *seq, bitstring **parent) | TProtoDeletMutations_bitstring | inline |
| inherit_low(sex_t SEX, bitstring *seq, bitstring **parent) | TProtoDeletMutations_bitstring | inline |
| init() | TProtoDeletMutations_bitstring | inlinevirtual |
| isRecombinationFree(string prefix) | TTProtoWithMap | |
| loadFileServices(FileServices *loader) | TProtoDeletMutations_bitstring | virtual |
| loadStatServices(StatServices *loader) | TProtoDeletMutations_bitstring | virtual |
| loadUpdaters(UpdaterServices *loader) | SimComponent | inlinevirtual |
| recombine(unsigned long indID) | TTProtoWithMap | static |
| recordRandomMap() | TTProtoWithMap | |
| registerGeneticMap() | TTProtoWithMap | |
| reset() | TProtoDeletMutations_bitstring | inlinevirtual |
| reset_effect_table() | TProtoDeletMutations_bitstring | |
| reset_recombination_pointers() | TTProtoWithMap | |
| resetParameterFromSource(std::string param, SimComponent *cmpt) | TProtoDeletMutations_bitstring | virtual |
| retrieve_data(BinaryStorageBuffer *reader) | TProtoDeletMutations_bitstring | virtual |
| set_effect(unsigned int at, unsigned int loc, float val) | TProtoDeletMutations_bitstring | inline |
| set_effects() | TProtoDeletMutations_bitstring | |
| set_effects_exp() | TProtoDeletMutations_bitstring | inline |
| set_effects_gamma() | TProtoDeletMutations_bitstring | inline |
| set_effects_lognorm() | TProtoDeletMutations_bitstring | inline |
| set_index(int idx) | TraitPrototype | inlinevirtual |
| set_paramset(ParamSet *paramset) | SimComponent | inlinevirtual |
| set_paramset(std::string name, bool required, SimComponent *owner) | SimComponent | inlinevirtual |
| set_paramsetFromCopy(const ParamSet &PSet) | SimComponent | inlinevirtual |
| setEffectsFromInput() | TProtoDeletMutations_bitstring | |
| setGeneticMapParameters(string prefix) | TTProtoWithMap | |
| setMapIndex(unsigned int idx) | TTProtoWithMap | inline |
| setNumLociPerChromosome(string param_name) | TTProtoWithMap | |
| setParameters() | TProtoDeletMutations_bitstring | virtual |
| setRecombinationMapFixed() | TTProtoWithMap | |
| setRecombinationMapNonRandom(vector< vector< double > > *lociPositions) | TTProtoWithMap | |
| setRecombinationMapRandom() | TTProtoWithMap | |
| setSelectionParameters() | TProtoDeletMutations_bitstring | |
| SimComponent() | SimComponent | inline |
| store_data(BinaryStorageBuffer *saver) | TProtoDeletMutations_bitstring | virtual |
| TProtoDeletMutations_bitstring() | TProtoDeletMutations_bitstring | |
| TProtoDeletMutations_bitstring(const TProtoDeletMutations_bitstring &T) | TProtoDeletMutations_bitstring | |
| TTProtoWithMap() | TTProtoWithMap | inline |
| TTProtoWithMap(const TTProtoWithMap &TP) | TTProtoWithMap | |
| unregisterFromGeneticMap() | TTProtoWithMap | |
| write_effects_to_parameter() | TProtoDeletMutations_bitstring | |
| ~SimComponent() | SimComponent | inlinevirtual |
| ~StorableComponent() | StorableComponent | inlinevirtual |
| ~TProtoDeletMutations_bitstring() | TProtoDeletMutations_bitstring | |
| ~TTProtoWithMap() | TTProtoWithMap | virtual |
