ttquanti.cc File Reference

#include <sstream>
#include <fstream>
#include <string.h>
#include <cmath>
#include <algorithm>
#include <utility>
#include "simenv.h"
#include "ttquanti.h"
#include "ttquanti_bitstring.h"
#include "ttquanti_epistasis.h"
#include "filehandler.h"
#include "output.h"
#include "Uniform.h"
#include "tstring.h"
#include "utils.h"

Functions
void	store_quanti_trait_values (Patch *patch, unsigned int patchID, unsigned int size, unsigned int *cntr, sex_t SEX, age_idx AGE, DataTable< double > *ptable, DataTable< double > *gtable, unsigned int nTrait, unsigned int TraitIndex)

Detailed Description

Id

ttquanti.cc,v 1.38 2018/09/12 12:32:31 fred Exp

Nemo2

Copyright (C) 2006-2023 Frederic Guillaume guill.nosp@m.aume.nosp@m..fred.nosp@m.@gma.nosp@m.il.co.nosp@m.m

This file is part of Nemo

Nemo is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

Nemo is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA

created on

Date

14.11.2005

Author

fred

Function Documentation

store_quanti_trait_values()

void store_quanti_trait_values	(	Patch *	patch,
		unsigned int	patchID,
		unsigned int	size,
		unsigned int *	cntr,
		sex_t	SEX,
		age_idx	AGE,
		DataTable< double > *	ptable,
		DataTable< double > *	gtable,
		unsigned int	nTrait,
		unsigned int	TraitIndex
	)

{
  double *phe;
  TTQuanti *trait;
 
  for(unsigned int j = 0; j < size; ++j) {
 
    trait = dynamic_cast<TTQuanti*> (patch->get(SEX, AGE, j)->getTrait( TraitIndex ));
 
    phe = (double*)trait->getValue();
 
    for(unsigned int k = 0; k < nTrait; k++){
      ptable->set( k, patchID, (*cntr), phe[k]);
      gtable->set( k, patchID, (*cntr), trait->get_full_genotype(k));
    }
    (*cntr)++;
  }
 
}

References Patch::get(), TTQuanti::get_full_genotype(), Individual::getTrait(), TTQuanti::getValue(), and DataTable< T >::set().

Referenced by TTQuantiSH::setDataTables().